BAC Information

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BAC

Clone NameMSMg01-291L05
Chromosome16 (Build37)
Map Location 59,886,110 - 59,886,471
singlet/doubletsinglet
Overlap geneEpha6
Upstream geneOlfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6
Downstream geneLOC100043804, EG668168, LOC668170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291L05.T7 (MSMg01no291_l05.b1)MSMg01-291L05.TJ (MSMg01no291_l05.g1)
ACCAG420626AG420627
length731714
length of high quality
(start - end)
366 (46 - 411)247 (109 - 355)
definitionCHROMAT_FILE: MSMg01no291_l05.b1 PHD_FILE: MSMg01no291_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:34 2005CHROMAT_FILE: MSMg01no291_l05.g1 PHD_FILE: MSMg01no291_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTCTTATCTCAATCATTATTTTAAGACAGATATTCTCAGGTTT
TTATGGCCATTGTCATTTTACCCTAATTTTAGGAGCAAAGTGAAATTTTT
TTGTATGCCTTTGTTAATAGTTACATGTGTGCTGTAACACTTACTGTATG
TATTAAGGAGTAAGGATAATAACTGTCTTTAATCCCTTTGCTCTGGGACC
ATTCTTTTGTTAGTATTGTTTTATTTACATTGAAGCTTTAAAGTGTCCCA
TTCATCTTTATGCATGCTGTGTATTAATTGAAGAAACTCTGCATTTCTAA
TACTTCTAAGACTATGGCAATTTGTCTCCAAATTAGCTGCGTGCCAGCCT
CACATATTGGTTAACCCCACCACCAATTTCTACAAGTCATCACTAATAGG
ATATTAAGCAATTTTGAAAACAATTATTTTGAAATGTTTAAGTTATTTTA
GGGTGGTTTATCAAAAAGACACCTTCATTATAACTTCTGATATTCTTTTT
AAGACTATGAAAAAGTGCATCACAATATTTTTTAAAATAAACATTTATTT
ATATGTACCAGTGCCTGCCTGGTTGTATGTTTGTATGCTTTGGGCATATC
TGGTGCCTGAGGAAACCAGAAGTTATTGACTTTTTACAACTGGAGTTACA
GACAGTTGTAAGCCATGTGGTTGTTGTGATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCTGTTTAGTTCTGTACCCCACTTTTAAATAGGGTAATTTGT
TTCTTCGGAGTCTAACTTCTTGAGTTCTTTGTATATATTGGTTATTAGCC
CTCTATCAGATGTAGGATTGGTAAAGACCTTTTCCCAATCTGTTGGTTGC
CTTTTTGTCCTATTGACAGTGTCCTTTGGTTTGCAATTTTATGAGGTACC
ATTTGTTGATTTTTTATTTTAAAAGCATAAGCTTTTTGCATTTTGCATTT
TCCTTGTTGTGTCAATATTTTCTATGATATCTTCTGCCCCTGTTATTCTC
TCTTCTCCCACTTTTGGGGGGGGCAGAAATCAATGTCAGTTCTTTTCCCC
CCCACTCCCAAATGCTTGCATCTATGACTCCTGATCTCTTTTCTAGATTT
TCTATCTCCAGGGTTGTCTCCCTTTGTGAATTCTTTATTGTTTCTATTTC
CATTTCAAGATCCTCAATGGTTTTGTTCAATTCCTTCACCTGTTTGGTTG
TGTTTTCCTGCAACTCTTTAAGGGATTTTTGTGTTTCCTCTTTTTGGGCT
TCCACCTGCTTACCTATGTTCCCCCTGCATTTCTTTACTGGAGCCATTTT
ATGCCCTTCCTAATGTCCTCTATCCTCATCATGAGAAAGCGATTTTAATG
AATATATTTGCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_l05.b1 MSMg01no291_l05.b1 CHROMAT_FILE:
MSMg01no291_l05.b1 PHD_FILE: MSMg01no291_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:34 2005
         (366 letters)



>mm_chr16_59885906_59886671
          Length = 766

 Score =  654 bits (338), Expect = 0.0
 Identities = 356/362 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttcttatctcaatcattattttaagacagatattctcaggtttttatggcca 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttcttatttcaatcattattttaagacagatattctcaggtttttatggcca 264

                                                                       
Query: 65  ttgtcattttaccctaattttaggagcaaagtgaaatttttttgtatgcctttgttaata 124
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgtcattttagtgtaattttaggagcaaagtgaaatttttttgtatgcctttgttaata 324

                                                                       
Query: 125 gttacatgtgtgctgtaacacttactgtatgtattaaggagtaaggataataactgtctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttacatgtgtgctgtaacacttactgtatgtattaaggagtaaggataataactgtctt 384

                                                                       
Query: 185 taatccctttgctctgggaccattcttttgttagtattgttttatttacattgaagcttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taatccctttgctctgggaccattcttttgttagtattgttttatttacattgaagcttt 444

                                                                       
Query: 245 aaagtgtcccattcatctttatgcatgctgtgtattaattgaagaaactctgcatttcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagtgtcccattcatctttatgcatgctgtgtattaattgaagaaactctgcatttcta 504

                                                                       
Query: 305 atacttctaagactatggcaatttgtctccaaattagctgcgtgccagcctcacatattg 364
           |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 505 atacttctaagactatggcaatttgtctccaaattagctgtgtgctagcctcacatattg 564

             
Query: 365 gt 366
           ||
Sbjct: 565 gt 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)