CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAAATATATCAAATTCTATTTGATAGAAATATAAGCTATTAAAAT
GGAAACATGGGTAAAAATATACATCACATAGATTTAAAAAGTAAGATGGA
AACTTTTCATGAAAACTTTTTTAAAAAAGCAATGTGTATGAATAAACTTA
ATAAATAATACCTAGAAAATACTTGGAGCAAAATCAAAGGAGAAATTAAA
TAGTATGTCTGTAGAATATTAGAGAAGGACCATGACATGGAAAACAGATA
TAATTTGGAGGTAAAATATTTTTAGAAGCCCTCCTAAAAGTATTTAATTG
GCTTTCCAATCAGCAAGGCCACTAGTAGGTTGGGATAAGTATGTGATCAG
TTTAGTTCTAATACCCCACANCAAACCTCTAGTGACTACTGTTGTTATAG
TGCTGAGCGTGTAGTGAAAACATGAAACATCCTGGGTCTGACTTCTCTGG
CCAGGACTCTGAGATGACAGAGAAGAATGGTCACCACACGCAGGTGAGGC
GTGTAATAATAGGCCTGTAGTCTTGAAAAGGTGTTTAGCCATGGGATAAA
AATATGTTTACTCCTTCANAGAGAACAAAAAGATGCCTTGACAGCAGCCC
TGCTTTTAAAAAGATATTGATGCGCGTGAATATCGAAAAAAAGTCTGTGG
ATAATACCATCGAACTCTTTCATTTCTCAACTTTTTCCCACCTCCGAGTA
TGTTGTCCAGGG

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTATATTTCCAAGACTTTTAACA
TGAGTGGATTTTGCCAAATATTTCCTGAGCATCTAGTGAAATGGTCATGT
ACTTTTTTTTTTTTTTTTTAGTTTCTTTATGTAGTGGACTGCATTGATAA
ATTTCCTTATGTTGAACAATCCCTGCATCCTTGGGATGAAGCCTACTTGA
TAGTGGTGAATGATCATTTTGATATGTTCTTGGATTCAGTTGGCAAGAAT
TTTATTGAGTATTTTTGCATTGTTATTCATAAGGGAAACTGGTCTGAAGT
TTTCTTTGTTTGTTATTCTTCCCCCCCCCCCCCNTTNATAGAATGAATNA
TGTAGTGTTTTTCCCCCCCCCAAAAAAAAAAAATAAATTGGGGGGTGGGG
GGGGCCTCCGTCATCATTGTGGTCTCCCCCCCCCCTTCCTCGTTTTTTCT
CTCTTTTCTCCCTCCCTTCTTCTCTTCTCCCTCTTTCCCTTTTCTCTTCT
TTCTCTTTTTTTATTTTTTCTCCCTCCCCTTGTATTTCAGGCAGGCGCCT
TTCTTTCCAATTTCTTTACTCGCCCCCTACATTGTTCTTTTGCCCCTACT
ATTCCCCCTTCCTTTCTTCCTTACTTTTCACTCCTCTTTCACCACCTTCC
TCTCTTTCTCCTCCCCACCACCCACACTTTCTCGCTTCATTTCTATTCCT
TTTTCTTTTGT

Query= MSMg01no292_f21.b1 MSMg01no292_f21.b1 CHROMAT_FILE:
MSMg01no292_f21.b1 PHD_FILE: MSMg01no292_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:25 2005
         (541 letters)



>mm_chr16_83336548_83337485
          Length = 938

 Score =  775 bits (401), Expect = 0.0
 Identities = 504/542 (92%), Gaps = 13/542 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaaatatatcaaattctatttgatagaaatataagctattaaaatggaaacat 64
           |||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 205 gaattccaaaatatattaaattctatttgatagaaatataagctattaaaacagaaacat 264

                                                                       
Query: 65  gggtaaaaatatacatcacatagatttaaaaagtaagatggaaacttttcatgaaaactt 124
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||
Sbjct: 265 gggtaaaaatatacatcacataaatttaaaaagtaagatggaaacttttcatgaaatttt 324

                                                                       
Query: 125 ttttaaaaaagcaatgtgtatgaataaacttaataaataatacctagaaaatacttggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 ttttaaaaaagcaatgtgtatgaataaacttaataaataatacctaggaaatacttggag 384

                                                                       
Query: 185 caaaatcaaaggagaaattaaatagtatgtctgtagaatattagagaaggaccatgacat 244
             | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgatatcaaagaagaaattaaatagtatgtctgtagaatattagagaaggaccatgacat 444

                                                                       
Query: 245 ggaaaacagatataatttggaggtaaaatatttttagaagccctcctaaaagtatttaat 304
           ||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||| ||
Sbjct: 445 ggaaaacagatataagttggaggtaaaatatttttagaagccctgctaaaaatattttat 504

                                                                       
Query: 305 tggctttccaatcagcaaggccactagtaggttgggataagtatgtgatcagtttagttc 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 tggctttccaatcagcaaggccactagcaggttgggataagtatgtgatcagtttagttc 564

                                                                       
Query: 365 taatacccca--c-ancaaacctctagtgactactgttgttatagtgctgagcgtgtagt 421
           ||||||   |  | | ||||| |||||||||||||||| |||||||||||||| ||||||
Sbjct: 565 taatac---atgctagcaaacgtctagtgactactgttcttatagtgctgagcatgtagt 621

                                                                       
Query: 422 gaaaacatgaaacatcctgggtctgacttctctggccaggactctgagatgacag-agaa 480
           | |||||   |||||| ||||||| |||| |||||||||||||||||||||| || ||||
Sbjct: 622 ggaaaca---aacatcatgggtctaacttttctggccaggactctgagatga-aggagaa 677

                                                                       
Query: 481 gaatggtca-ccacacgcaggtgaggcgtgtaataataggcctgtagtcttgaaaaggtg 539
           ||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 678 gaatggt-agccacacgcaggtgaggcatgtaataataggcctgtagtcttgaaaaggtg 736

             
Query: 540 tt 541
           ||
Sbjct: 737 tt 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 938
Length adjustment: 10
Effective length of query: 531
Effective length of database: 928
Effective search space:   492768
Effective search space used:   492768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)