BAC Information

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BAC

Clone NameMSMg01-292I16
Chromosome16 (Build37)
Map Location 52,965,247 - 52,965,558
singlet/doubletsinglet
Overlap geneLOC667895
Upstream geneCblb, Alcam, LOC100043430
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292I16.T7 (MSMg01no292_i16.b1)MSMg01-292I16.TJ (MSMg01no292_i16.g1)
ACCAG421235AG421236
length764769
length of high quality
(start - end)
315 (45 - 359)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no292_i16.b1 PHD_FILE: MSMg01no292_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:38 2005CHROMAT_FILE: MSMg01no292_i16.g1 PHD_FILE: MSMg01no292_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATAGTCCAGTGTAAAAAATAGAGAACCTATAGATTTGAAAATTTC
TAAGAATGTATAATATTTAAGAGAAGAGAACTGCATAAGAATCCCCAGAA
TCTCTGGATCACGAGGACTGTGGTTTTCCTTTAAGTGTCTATACATAAAT
CATCCTCTCTAGTTTGTATATTTCAGGATTTTCTGTCTTATTCCTTACTC
ATTACCTGAAGTTCAAGCAAAGATGAACTTGCAGCCTTCATCAGTGAAGT
GGCCCTAGTGTGTTCCATGTGTTGTGTGAAGTTCAAATGAATAAAGATTT
TCAGCATTTCTTTGTTTGAGCCCCCCCTCCATTGGTTAATCATAATGGAG
CTTTCTCCTGTCCCCACCTTCCTGACAATATAATTTTCTAGATTCCAGTT
CAAGTGTGAAGTTGATATATCATGGGAAAAAATTCAAGGTAGCAGCAGCT
TGAAACAGCTAGTCCCAGTACACTAACATATAAGACACCGAAAAAGCGAA
TGTGTGTCTCTCATTTCCCTTTCTTCAGTTACACTGACTAGGGACTTATC
TTTAGATGATGTTACCCTTAGTGGACTTGGGTTTTTATCTCATAGTTTTT
CTGTACCACCCTTTCCTCTCTCATTGATCCCCCGCCCTGTTTTCCCTTCA
TGTCCCGCTGTTCCCTCTGATAATTAGTCCCGTTCTCCCTTCCTGTTTTT
TCTGTTCTTATGTA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGA
TCAAAAATTCAGTTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAAAAAATTGGACATAGTACTACTGGAGGATC
CTGCAATACCTCTTTTTGTTATACCCCCCCACCCATGTCCCAACCGGTAA
GAAGGACACATGCTCCACCCACCCTCATAAAAAACTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATACCCCTCAACAGACTAATGGATACAGAT
AATGTGGTACATTTACACAACGGAGTACTACTCAGCTATTAAAAAAAATG
AATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTG
AGTGACGGAACCCATTCACAAAGGAACTCGCACTATATGTCTCCCCTGAT
TATCTGCATATTAGCTCCAGAACCTTCAGGATTGCCTAGATTATAATATT
CTAATTCGCTTACCCTTCTCGTAAATCCCGTATTTATCTGATTTCTAGAG
GCGTCGACCCTTTTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_i16.b1 MSMg01no292_i16.b1 CHROMAT_FILE:
MSMg01no292_i16.b1 PHD_FILE: MSMg01no292_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:38 2005
         (315 letters)



>mm_chr16_52965044_52965758
          Length = 715

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatagtccagtgtaaaaaatagagaacctatagatttgaaaatttctaagaat 63
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaattccatagtccagtgtataaaatagagaacctatagatttgaaaatttctaagaat 456

                                                                       
Query: 64  gtataatatttaagagaagagaactgcataagaatccccagaatctctggatcacgagga 123
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 455 gtataatatttaagagaagagaactgaataagaatccccagaagctctggatcacgagga 396

                                                                       
Query: 124 ctgtggttttcctttaagtgtctatacataaatcatcctctctagtttgtatatttcagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ctgtggttttcctttaagtgtctatacataaatcatcctctctagtttgtatatttcagg 336

                                                                       
Query: 184 attttctgtcttattccttactcattacctgaagttcaagcaaagatgaacttgcagcct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 attttctgtcttattccttactcattacctgaagttcaagcaaagatgaacttgcagcct 276

                                                                       
Query: 244 tcatcagtgaagtggccctagtgtgttccatgtgttgtgtgaagttcaaatgaataaaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tcatcagtgaagtggccctagtgtgttccatgtgttgtgtgaagttcaaatgaataaaga 216

                       
Query: 304 ttttcagcattt 315
           ||||||||||||
Sbjct: 215 ttttcagcattt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)