BAC Information

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BAC

Clone NameMSMg01-292J21
Chromosome16 (Build37)
Map Location 51,772,784 - 51,773,068
singlet/doubletsinglet
Overlap genenone
Upstream geneEG639820, LOC627543
Downstream geneCblb, Alcam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292J21.T7 (MSMg01no292_j21.b1)MSMg01-292J21.TJ (MSMg01no292_j21.g1)
ACCAG421291AG421292
length776743
length of high quality
(start - end)		370 (46 - 415)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no292_j21.b1 PHD_FILE: MSMg01no292_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:44 2005CHROMAT_FILE: MSMg01no292_j21.g1 PHD_FILE: MSMg01no292_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCCTTTCACAGGAAATGCAGGGATGAAGAGTGGAGCATAGACTG
AAGAAAAGGCCATTCACAGTCTGCTCCACCTAGAGATCCATCCCATATGC
AGACACCAAACCCAGATACTATTGTGGGTGCCAACAAGTGCTTACTGATA
GGAGCCTGGTACATCTGTTCCCTGAGAGGCTTTGCCAGAACTGGACCAAT
ACAGATGTGGATTGGACTAAGTGTAGGGACCCGAATGGGGAAGTTAGGGC
AAGGACTGAAGGAGATGAATGGGTTTGCAACATCGTATGAAAAACAACAA
TATCAACAAACCAGACCCCCCCCCCAAAGCTCCCAGGGACTAAACTACCA
ACAAAAGAGTGCACCCCCCTCTGGCTGGGTGGATGNTGTTTTTTTCTTTT
CTCCCTTACCCCCTCAACCTTTCCTACCACTCCTCCCCTTTTTAAATTAA
TTTACTTCATCTCCACACCGCTTTTCTCACTTCATCTCCTATATCCCTTT
AATTTTTCTCCTACCCTATGCCTCCTCCTATACATCCTTCGCCTTCATCT
TCTCATATCTTCCTTTTTTCTTTCATTTTTTTCTCTCCAATGTATATCTC
TATTCTTTCCTGCCCTATTCTTTATTCTCCTCCTTTTTCCCTCTCATATT
TCTCCTTCCTTTTGTTACCCCCCATCTTTCTCCCTTTTTTCTCACCTTAC
TCACCCTACCTTTCTTTCATTCTTAC

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAATCTGTAATGCTGGTTTTATGCA
ACATAATTTTAATAGCAGTTACCTTAACTCCTAAAAGGAATGAACACCTT
CTAATTTCCTATATGACTGTACTGACAACAGGAGATTGTTTTATTTTTCT
CAATTTCTTGACAAAACAACATACTTATGGACAGGGAATCTGTAATCTAT
CTAACGAGTCTGGCTCAGAAAAAAATTAAATAGTATTCTGGGAAGTATGA
AAGTAATATAAACTGCAAACACCATGCTATCTACTGCTGGCTTTTGTACC
GCAGTAGCAGATTTGAGAAGTTATACCGCCTAGAAAACAGCAAAGTTGAA
ATGAGACTGGCTTCCACCACCTATTGGATCACTCAGTAAGTATATAGGAG
ATGGTACTCCACATTGATGAGAACAGTTTAATAGAAACCCTGCTGGTGCC
ATTCCAGGGAAGATTGGAAGGAAATCGACTGGCCCTACAGTACAGGGTGT
CTTGCATTTCACTGTGACCCACAAGGTTAGAGTCTAATTTATCCACATTT
CACACAGAGCTTCTATTTATGCTCAGTATAAACAGCCATTTTGAACAATC
TTACATTTCTCGTATCTCATTAACATTTAACTTGCTTTCTGAAATAACCA
CGTACGCATCACATCATCCTGTATTTTAATACAATTGTGACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_j21.g1 MSMg01no292_j21.g1 CHROMAT_FILE:
MSMg01no292_j21.g1 PHD_FILE: MSMg01no292_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:44 2005
         (285 letters)



>mm_chr16_51772584_51773268
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaatctgtaatgctggttttatgcaacataattttaatagcagttaccttaactcctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaatctgtaatgctggttttatgcaacataattttaatagcagttaccttaactcctaa 260

                                                                       
Query: 61  aaggaatgaacaccttctaatttcctatatgactgtactgacaacaggagattgttttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggaatgaacaccttctaatttcctatatgactgtactgacaacaggagattgttttat 320

                                                                       
Query: 121 ttttctcaatttcttgacaaaacaacatacttatggacagggaatctgtaatctatctaa 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ttttctcaatttcttgacaaaacaacatacttatggacaaggaatctgtaatctatctaa 380

                                                                       
Query: 181 cgagtctggctcagaaaaaaattaaatagtattctgggaagtatgaaagtaatataaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgagtctggctcagaaaaaaattaaatagtattctgggaagtatgaaagtaatataaact 440

                                                        
Query: 241 gcaaacaccatgctatctactgctggcttttgtaccgcagtagca 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaacaccatgctatctactgctggcttttgtaccgcagtagca 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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