BAC Information

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BAC

Clone NameMSMg01-292M02
Chromosome16 (Build37)
Map Location 40,910,302 - 41,100,528
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667400
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292M02.T7 (MSMg01no292_m02.b1)MSMg01-292M02.TJ (MSMg01no292_m02.g1)
ACCAG421391AG421392
length735727
length of high quality
(start - end)		187 (104 - 290)581 (77 - 657)
definitionCHROMAT_FILE: MSMg01no292_m02.b1 PHD_FILE: MSMg01no292_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:54 2005CHROMAT_FILE: MSMg01no292_m02.g1 PHD_FILE: MSMg01no292_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,910,302 - 40,910,484)(41,099,948 - 41,100,528)
sequence
CTCACTATTCGAACGGGGCGCGGAATTCTACACTTGCAATAGTAGAATGA
ATGGCAAGGAAGGGGGACTGAAACCAGGAAATAATCATTTATCTTTGGGT
TTCATTGAGAAGCATGGTTAAGTTTCTCCCAAAGAATGTACTTTCAAACT
TTCATTAAAAACTCCCTTACATACGTAGTCTATGTTCCTCCCTTATCAGT
TTTGAATCTGCAATAATCAGTTTTAACATCCCTAAGATCAGGTTCTCTAA
AGTAAAGACTGACAAAAGAATATAAGAGGCAGAGATTTAGGTCAGATGAT
CACATGAACTGATGAAGTGGCACCCACATGTTTTTTTTTTGCCCCGCCCC
CCTGCATGTTTGTATGATTGTTTGTTTGTTTCCCCCCCCCCACAAAAAAA
AAAAAAAAAGCGGGGGGGGGGGGTATATTATATTTCATCTGACCGCTATA
TGCGTGTTTTATTGCTTTCTCGCAATTTTTGATGATTACTTACCCCCCTA
ATACCCTCTCATATTGTTACCCCCCCTTTGGTTTACACCCTACTAACCTG
CAGATTTTTTATTGTTTTCACCCATTTTTCACTCCCGCCCCATTATTCCC
TCTCCCTTTTTCCCCCCCCTATTCCTCATTCCCAGGCAATACTATTTTTT
TTTTTTTTGACAGCCCCCCTTTCTGGTCTACCCCATGATGTGTGTAGCTA
TGCTGCCCTTCCACGTTTCCCAGAGCATCTCACTA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTGAAGCTCTTTTTAAATTAGA
TTATTCTATTCCCAGGGTCCTTTTTCCATTTTTTAGAAGGAACTGAGGCA
GTTCAAACTTATAAATAATTTTATTTAGTAATATATAATTGTGTAATAAG
TTTCACTTGTAGAGTTTCTAAAACTCAATTTTATATTCACCTGAATAACT
CAGAGAATCAAAGTTTAATGATTCCAGTGGCTTTAATTAGCTCCACTCTA
ACTGTCTAATTGTCAAAGAAATAGAAATTTAAGTGAGCTTGAAACACAGT
ATTACGCTTAATGAATTATAATTTTTCATAACTTCCACTGTTGGCCATGT
TGCAGGAAAAAATGCACACAAACATACTCACAGACAAGCATTTCTGTTAG
TTTTGTACATTGGTCATTATGCAAAACCCAAATTATATACTTATTGTTAG
GAGTCTGGGAAGGTGGTTTACTGGTTAAAAGCACTCCATGCCATGTTCTT
CTAGAGGATCCAAGTTATAGTTCGGCTCTCCTTCAACCTCTTCTAAGTTC
TGCTCTGGGATATCTGATATTATTTTCTGGCTTCTGCAGGCACCCATCCA
CATGCTATAAATACATTACACACACACACACACACACGTATTTTTTTTTT
TCTTTCTTTTCCTTTACGCCTTGATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_m02.b1 MSMg01no292_m02.b1 CHROMAT_FILE:
MSMg01no292_m02.b1 PHD_FILE: MSMg01no292_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:54 2005
         (187 letters)



>mm_chr16_40910102_40910688
          Length = 587

 Score =  339 bits (175), Expect = 9e-98
 Identities = 181/183 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgagaagcatggttaagtttctcccaaagaatgtactttcaaactttcattaaaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgagaagcatggttaagtttctcccaaagaatgtactttcaaactttcattaaaaact 260

                                                                       
Query: 61  cccttacatacgtagtctatgttcctcccttatcagttttgaatctgcaataatcagttt 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 261 cccttacatacgtagtctatgttcctcccttaccagttttgaatctgcaataaccagttt 320

                                                                       
Query: 121 taacatccctaagatcaggttctctaaagtaaagactgacaaaagaatataagaggcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacatccctaagatcaggttctctaaagtaaagactgacaaaagaatataagaggcaga 380

              
Query: 181 gat 183
           |||
Sbjct: 381 gat 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no292_m02.g1 MSMg01no292_m02.g1 CHROMAT_FILE:
MSMg01no292_m02.g1 PHD_FILE: MSMg01no292_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:54 2005
         (581 letters)



>mm_chr16_41099634_41100614
          Length = 981

 Score = 1093 bits (565), Expect = 0.0
 Identities = 577/581 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgaagctctttttaaattagattattctattcccagggtcctttttccattttttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 acttgaagctctttttaaattagattattctattcccagggtcctttttccattttttag 836

                                                                       
Query: 61  aaggaactgaggcagttcaaacttataaataattttatttagtaatatataattgtgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 aaggaactgaggcagttcaaacttataaataattttatttagtaatatataattgtgtaa 776

                                                                       
Query: 121 taagtttcacttgtagagtttctaaaactcaattttatattcacctgaataactcagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 taagtttcacttgtagagtttctaaaactcaattttatattcacctgaataactcagaga 716

                                                                       
Query: 181 atcaaagtttaatgattccagtggctttaattagctccactctaactgtctaattgtcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 atcaaagtttaatgattccagtggctttaattagctccactctaactgtctaattgtcaa 656

                                                                       
Query: 241 agaaatagaaatttaagtgagcttgaaacacagtattacgcttaatgaattataattttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 agaaatagaaatttaagtgagcttgaaacacagtattacgcttaatgaattataattttt 596

                                                                       
Query: 301 cataacttccactgttggccatgttgcaggaaaaaatgcacacaaacatactcacagaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 595 cataacttccactgttggccatgttgcaggaaaaaatgcacacaaacatacacacagaca 536

                                                                       
Query: 361 agcatttctgttagttttgtacattggtcattatgcaaaacccaaattatatacttattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agcatttctgttagttttgtacattggtcattatgcaaaacccaaattatatacttattg 476

                                                                       
Query: 421 ttaggagtctgggaaggtggtttactggttaaaagcactccatgccatgttcttctagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 475 ttaggagtctgggaaggtggtttactggttaaaagcactccatgccatgttcttcgagag 416

                                                                       
Query: 481 gatccaagttatagttcggctctccttcaacctcttctaagttctgctctgggatatctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gatccaagttatagttcggctctccttcaacctcttctaagttctgctctgggatatctg 356

                                                    
Query: 541 atattattttctggcttctgcaggcacccatccacatgcta 581
           | |||||||||||||||||| ||||||||||||||||||||
Sbjct: 355 acattattttctggcttctgtaggcacccatccacatgcta 315


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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