Query= MSMg01no293_n24.b1 MSMg01no293_n24.b1 CHROMAT_FILE:
MSMg01no293_n24.b1 PHD_FILE: MSMg01no293_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:25 2005
(676 letters)
>mm_chr16_90428237_90429312
Length = 1076
Score = 1183 bits (612), Expect = 0.0
Identities = 654/672 (97%), Gaps = 9/672 (1%)
Strand = Plus / Minus
Query: 5 gaattccatcaagttgacagctaacactcaccattacaggctcctctttgtatcatggat 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gaattccatcaagtcgacagctaacactcaccattacaggctcctctttgtatcatggat 797
Query: 65 ctatatcctggtaaccccaaggtaaccccaaaaccttagatagaaaatacacagtgccgg 124
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 796 ctatatcctggtaaacccaaggtagccccaaaaccttagatagaaaatacacagtgccgg 737
Query: 125 gcgtggtggcgcacacctttaatcccagcacacgggaggcagaggcaggcggatttctga 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gcatggtggcgcacacctttaatcccagcacacgggaggcagaggcaggcggatttctga 677
Query: 185 gttcgaggccagcctggtctacatagtgagttccaggacagccagggctacacagagaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gttcgaggccagcctggtctacatagtgagttccaggacagccagggctacacagagaaa 617
Query: 245 ccctgtctcgaaaaaccataaaaaagaaagaaagaaaagaaaatacacagcatgcactca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ccctgtctcgaaaaaccataaaaaagaaagaaagaaaagaaaatacacagcatgcactca 557
Query: 305 tacaccattcctcctggctcaggagtagagcatgctgtcaaaacgaatggtcacgttcac 364
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 556 tacaccattcctcctggctcaagagtacagcatgctgtcaaaacgaatggtcacgttcac 497
Query: 365 caaagctggccagcaggggtactgcaccacatacacagaccagacacagctaaggaaacg 424
|||||||||||||||||||||||||||||||| || | | |||||||||||||
Sbjct: 496 caaagctggccagcaggggtactgcaccacat--actg------c-cagctaaggaaaca 446
Query: 425 acccaaatgcaaaatggcgaggtccactttgtcaaatcatcctaaattgaaccaacgtaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acccaaatgcaaaatggcgaggtccactttgtcaaatcatcctaaattgaaccaacgtaa 386
Query: 485 gtcaaagagtgtctacacttcctagccctctccatcattctcaactccttggaaggggtc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtcaaagagtgtctacacttcctagccctctccatcattctcaactccttggaaggggtc 326
Query: 545 aaaagggcaatggtatgactcacagcagggagcacctcagaggactcacagcagggagca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaagggcaatggtatgactcacagcagggagcacctcagaggactcacagcagggagca 266
Query: 605 cctcagaggactcacagcagggagcacctcagaggactcacagcagggagcaccccagag 664
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 cctcagaggactcacagcagggagcacctcagaggactcacagcagggagcacctcagag 206
Query: 665 gactcacagcag 676
||||||||||||
Sbjct: 205 gactcacagcag 194
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no293_n24.g1 MSMg01no293_n24.g1 CHROMAT_FILE:
MSMg01no293_n24.g1 PHD_FILE: MSMg01no293_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:25 2005
(298 letters)
>mm_chr16_90228480_90229177
Length = 698
Score = 576 bits (298), Expect = e-169
Identities = 298/298 (100%)
Strand = Plus / Plus
Query: 1 acaacaggcaaagcttacaagaaatggtatactgtacctagtctataaaagggtttctcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaacaggcaaagcttacaagaaatggtatactgtacctagtctataaaagggtttctcg 260
Query: 61 ttggatacattaacctcgtttttacaccttggaaattccaatgagatgattataaacaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggatacattaacctcgtttttacaccttggaaattccaatgagatgattataaacaac 320
Query: 121 acattcaaccttctaaataagtaatgctcaagcaattaggtaattggtagtatagtgcgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acattcaaccttctaaataagtaatgctcaagcaattaggtaattggtagtatagtgcgt 380
Query: 181 aatactgggaatccaattatttcccctaacaaatctctcttttacaaattaattagggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatactgggaatccaattatttcccctaacaaatctctcttttacaaattaattagggca 440
Query: 241 acattaccacaaagccaataggaaaaaagtaaaaaccctaacctgcaaacacaaatct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acattaccacaaagccaataggaaaaaagtaaaaaccctaacctgcaaacacaaatct 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space: 199121
Effective search space used: 199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
