BAC Information

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BAC

Clone NameMSMg01-294D17
Chromosome16 (Build37)
Map Location 49,407,695 - 49,407,929
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061
Downstream geneEG216818, LOC628903, Ift57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294D17.T7 (MSMg01no294_d17.b1)MSMg01-294D17.TJ (MSMg01no294_d17.g1)
ACCAG422459AG422460
length736739
length of high quality
(start - end)
239 (130 - 368)287 (78 - 364)
definitionCHROMAT_FILE: MSMg01no294_d17.b1 PHD_FILE: MSMg01no294_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:52 2005CHROMAT_FILE: MSMg01no294_d17.g1 PHD_FILE: MSMg01no294_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTATTATTTCCACTTAAAATCCTTTCCTTGAAGACTCTGCC
TGCAGCAAATCCCACGTGTTATTCTCACGCAACATAGAATACACCTCTTT
TAAATTGACCCATGCCTTGTTTGCTAATTTCACGGAGTCATCTATTGTTC
TCAAGTGGGAGACAAAATTAAAAAATAAAGAAGCACCTTTATAAAATTAT
GGGTTTTTTTTTTACATGTATTTGGGTATATGCACATGTGAACACAGGGG
ACTGTGGAGGTCTTAAATCCTCCCAGAGCTAGAGATATGGTTGGTTGTGA
ACTACCTTAAACAATATTTTTATTTTCCCCACCCCTCACCTACAAGAGTG
AAACAGTTCTTTTAAGCACCAAGCCATCTCATAAAGAAAACAAATGGCTT
TTTGTTAGCAAGGGCCTTTTTCCAACTTTGAATCTAAGTGACTTCATTAG
AGGTTGTCCTTGTTTATTTCTCTGCTGCTGTGATCAAACACCCTGACAAA
AAGCAATTGTTTTTCTTATATATGACAGAACTTTATTGGGGCAAACCACA
GCAAGAGCTCACGGCAGAAACAATAGGAGAATGCAGCTTAATGGTTTGCT
CAGCGTGCTTGCTTATATAGGGACTACCTGCCTAGGGCAGCACTGCCTAC
AGTAGAATGCCCCTTCCCCCTATCAATCATTAATCN
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATC
TTTTAAGGGGGCTATTTGATTTTCTGCCGTCCACCCTCTTGAGTTCTTTA
TATATATTGGATATTAGTCCCCTATCTAATTTAAGATAGGTATAGATCCG
TACAACCACTCTGAAATCAGTCTGGCGGTTCCTCTGAAAATTGGACATAG
TACTAGCGGAGGATCCTGCAATACCTCTCCTGGGCATATATCCAGAAGAT
GTCCCAACCAGTAAGAAGGACACATGCTCTACTATGTTCAAAGCAGCTTT
ATTTATAATAGCCAGTATGTTGATTGACCCCAGCCCCCCCTCAACAGAGG
AATGGATACAAAAAATGTGGTACATTTACACAAAGAAAAAACTACTCAGC
TGTTAGGAAGAATGAATTCACGAAATTCCTAGGCAAATGGTTGGACCTGG
AGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCAAATGAA
ATGTACTCACTGACAAGTGGATATTAACCCAGAAACTTAGTATAGCGAGA
TATAAGGTACAATATGTAAAACATATGAAACTGAAGAAGAATGAAGACCA
AAGTGTGGACACTTTGCTCATTCTTAGAATTGGAAACAATCACCCATGGA
AGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_d17.b1 MSMg01no294_d17.b1 CHROMAT_FILE:
MSMg01no294_d17.b1 PHD_FILE: MSMg01no294_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:52 2005
         (239 letters)



>mm_chr16_49407495_49408133
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacatagaatacacctcttttaaattgacccatgccttgtttgctaatttcacggagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 435 caacatagaatacacctcttttaaattgacccatgccttgtttgctaatttcatggagtc 376

                                                                       
Query: 61  atctattgttctcaagtgggagacaaaattaaaaaataaagaagcacctttataaaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atctattgttctcaagtgggagacaaaattaaaaaataaagaagcacctttataaaatta 316

                                                                       
Query: 121 tgggttttttttttacatgtatttgggtatatgcacatgtgaacacaggggactgtggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgggttttttttttacatgtatttgggtatatgcacatgtgaacacaggggactgtggag 256

                                                                  
Query: 181 gtcttaaatcctcccagagctagagatatggttggttgtgaactaccttaaacaa 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gtcttaaatcctcccagagctagagatatggttggttgtgaactaccttaaacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)