BAC Information

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BAC

Clone NameMSMg01-294L13
Chromosome16 (Build37)
Map Location 27,142,409 - 27,142,698
singlet/doubletsinglet
Overlap genenone
Upstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
Downstream geneOstn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294L13.T7 (MSMg01no294_l13.b1)MSMg01-294L13.TJ (MSMg01no294_l13.g1)
ACCAG422822AG422823
length889724
length of high quality
(start - end)
---291 (81 - 371)
definitionCHROMAT_FILE: MSMg01no294_l13.b1 PHD_FILE: MSMg01no294_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:28 2005CHROMAT_FILE: MSMg01no294_l13.g1 PHD_FILE: MSMg01no294_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTTCTATAATTTGAAGGCGCTNTCCGAGAGACTNNTGCGNGAGCCTG
ACAAGGANNNCAGGAAAGTTCCCANCAGCGAGGTTCGNAAAAGAGGGNNG
GNNNGGNNNAGAANNNAGAANAGNNTTTTNCACCACCAAACAAGAGGAGG
GAANNGNNNNGGGGGAANNANNNANNNNNNGAANGGGAAGGGGGGAGGGA
GAAAAGAAGAGAAGGGANGGAAAANNGANANGGGNNAGGGGGNAAAAGAA
GAGGAGAGGAGGNNNGGANNNAANGGGGAANNAGAGANGGATATTTTTGT
NGAAGATAAAGAGGAGGAGGAGTTGATGGAGGNGGTATGATANTTTAGAG
AGAATGAGGNGAAAGAAGGGGGATTTTTTTTGTGGTTTTNAAANGNAGNN
NAAAAANAAAAAAGGGGAGGAAGGGTTTTTTTGNGTGGGTTCTCTCCCCC
CCCCCCCACCACGAGGNGNGAGAGAGGGAGAGGNGGGGGGGGGGGGGGNG
NNNGGAAAAAAAAANNNNAAAGNNNNAAAAAGGGNNNNNNGGGNNNNNGG
GGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNGGGGNGGGGGGGA
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGNGG
GGGGGGGGGGGGGGGNGGGGGGGGNGNGGGGGGGGGGAGGGGGGGGGNGG
GGGGNGNNNGGGGGGGGGGGGGGNGGGGGGNGGGGGGGGGGGGGGGGGGG
GGGGGGNNNNGGGGGAGGGGGGGGGGGGAGGGGGGGAGAGAAGAAAAGGG
GAGAAGAGATTTTTTTTTTTTTTTTTAGTGAATAGATAGTAAGATGTAGA
GGGAGAAATTTTGGTTGAATAGTANGAGAATAAAATGAG
NATTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAACATGGAAAGCACAT
CTCTTAAGAGCCTCACTTCTTCTTTGCAACATGGATTTGGAATATTTTGC
TCTAGATTTAAAAAATAATACTCTTTTTCTATTTTTTAATAACATGTAGT
GTAAAATGTCTCTGTGTGTGATGTGTGTGTCTATCTGTGTGTGTGTCTAC
ATGTGAACAGACAAGCATGAATATAGATGACCAAAGACACCAGAGACATC
TTTGAACATGTAGCGCAGATCCCCTGAAATAGCAACAAGGACTCTCAACC
TCTGAGCTGTACTCCAATTTTTTTTATCTACCCCCCCCCACCTATAAAGC
CAAAACAACTGAGAAATACTACTGTGTTTTGAATTGACCCATAGTTTCAT
ATATCTTAATTCTTGGTCTGCAGTTGGTGGAACTGTTGGGGAAGGAATGG
GAAGTGTAGCCTTGTGGGAGGACATGGAGGTATATCACTAGAAGTAGGCT
TTGTAATTATTTTTTCTTTTTTTCTTGGATATTTTCTTTATTTACATTTC
AAATGTTTTCCCGTTTCCAGGTCTCCCCTTCAGAATTTCCTATCCCACAC
CCCTCCCTCTGCCTCTATGAGGGTGTGCACCCATCCGCCCACTCTTGCCT
CCCTGCCGTGGCATTCCCTACACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_l13.g1 MSMg01no294_l13.g1 CHROMAT_FILE:
MSMg01no294_l13.g1 PHD_FILE: MSMg01no294_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:28 2005
         (291 letters)



>mm_chr16_27142209_27142899
          Length = 691

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagaacatggaaagcacatctcttaagagcctcacttcttctttgcaacatggatttgg 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagaccatggaaagcacatctcttaagagcctcacttcttctttgcaacatggatttgg 260

                                                                       
Query: 61  aatattttgctctagatttaaaaaataatactctttttctattttttaataacatgtagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatattttgctctagatttaaaaaataatactctttttctattttttaataacatgtagt 320

                                                                       
Query: 121 gtaaaatgtctctgtgtgtgatgtgtgtgtctatctgtgtgtgtgtctacatgtgaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaaatgtctctgtgtgtgatgtgtgtgtctatctgtgtgtgtgtctacatgtgaacag 380

                                                                       
Query: 181 acaagcatgaatatagatgaccaaagacaccagagacatctttgaacatgtagcgcagat 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaagcatgaatatagatgtccaaagacaccagagacatctttgaacatgtagcgcagat 440

                                                             
Query: 241 cccctgaaatagcaacaaggactctcaacctctgagctgtactccaattt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccctgaaatagcaacaaggactctcaacctctgagctgtactccaattt 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)