BAC Information

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BAC

Clone NameMSMg01-294P17
Chromosome16 (Build37)
Map Location 40,535,349 - 40,535,601
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667400
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294P17.T7 (MSMg01no294_p17.b1)MSMg01-294P17.TJ (MSMg01no294_p17.g1)
ACCAG423006AG423007
length738740
length of high quality
(start - end)
318 (49 - 366)253 (440 - 692)
definitionCHROMAT_FILE: MSMg01no294_p17.b1 PHD_FILE: MSMg01no294_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:46 2005CHROMAT_FILE: MSMg01no294_p17.g1 PHD_FILE: MSMg01no294_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACCAGAGACAAAGACAAAAAGTTTAATCTACTATTAGAAATA
GCAATCCTCGCTAGGTTTTGTATGCACCATACAACACACCTGCCTAAATA
AGATAGAAGTGAAAGGAGAAACAGAGAGTTCTACAGCTGTGGATGTTTAT
TGAAATGCCCAGAAATAAAACTCATGGAGGCAAATTATCAGCGACATCAG
TCAAAAGTCCTTAAGCCTCATGCATAGGACATCCCATGTAATACCATAAA
AACGCACAGGTTTATTGTTCATGGAAAATACACCAAGACAGACCACATCC
TGGGTCATAAAACATATTATATGACTCCCCCCACACCAAATATATTCTTT
AGCCAAGTGAAATAGAATTTGAATGGGGTATCTGAAGATAACATAAGAGT
CAGAACTCTTTTGTTTGTTGGTTGGTTTTTTGTTTTTTGGGGTTTTATTG
GAGATAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTA
GACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGTCCCTCCTCCCAAGTG
CTGGGATTAAAGGCGTGCGCCACCAGTGCCCGGCTCAAAAATCAGAACTC
TTGAAAGCTGAGCAACCTACTTCTTAAATGATCTATAAATCAAAGGATGC
CCCAACAGAAAATTANAAATTATACTAAGCAGAATGAA
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCTTGTGTGCCTGGATCTCAGTA
GTGTGCTGATTGGGGATGTGTGGCCGTGTCTCGCTGTAGGTGTCATGGCT
GGTGTGAGTGGTAGGTATATCCAGGAGCAACAAGCTGTTTAGTGTGCCTC
TGGAATCCTGAGGCTAAGGAAGGATAAGGGTAGGTAGGGCCAGGGAGCTC
AGATGTGGAGAGATCACAGCATTTCTTGGATCTAGAAGATTATCCTCACA
GATTGAGGAGCCCAAACACAGAGCAGCCTGGGATAACCTCAGAATGCTTG
ATTTCCCTCGGGTTTCTTTTTTAATTCCCACCCCCAACACTAGTAACTGA
CGTGTACTTTGGAGATCATTATTAGGCAATGATAATAATGGCTGCATGAA
GCATTCTAGAGATTTGTGAGAACACTCAGCCAGGCCACTAAATTATTTAA
CTTTACACACTGCCTAGGTGTATTTTGTGTATGAATGTATGAATGGGGAT
GAAGTTCTCAAGGACATAGAAGATGTCAATTGCCCAATGGGACAAACCTT
ACAGAGCTCAGGTTCAAAGACCTGAAAAACATTGGACTTTTAAGATAAAA
ACCCAACTCTGACTCCATGGTGCAGAGATGCAATGCACAGAGCCCTGTTA
TTTGCAGCAGACAGTGCAGAAGGAGTTTGCATGGACTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_p17.g1 MSMg01no294_p17.g1 CHROMAT_FILE:
MSMg01no294_p17.g1 PHD_FILE: MSMg01no294_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:46 2005
         (253 letters)



>mm_chr16_40535149_40535801
          Length = 653

 Score =  427 bits (221), Expect = e-124
 Identities = 245/253 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctgcatgaagcattctagagatttgtgagaacactcagccaggccactaaattattta 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 453 ggctgcatgaagcattctagagatttgtgagaacactcagccaggccattaaactattta 394

                                                                       
Query: 61  actttacacactgcctaggtgtattttgtgtatgaatgtatgaatggggatgaagttctc 120
           |||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||
Sbjct: 393 actttacacactgcctaggtatatattgtgtatgaatgtatgaatgggaatgaagttctc 334

                                                                       
Query: 121 aaggacatagaagatgtcaattgcccaatgggacaaaccttacagagctcaggttcaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 333 aaggacatagaagatgtcaattgcccaatgggacaaaccttacagagcttaggttcaaag 274

                                                                       
Query: 181 acctgaaaaacattggacttttaagataaaaacccaactctgactccatggtgcagagat 240
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ccctgaaaatcattggacttttaagataaaaacccaactctgactccatggtgcagagat 214

                        
Query: 241 gcaatgcacagag 253
           |||||||||||||
Sbjct: 213 gcaatgcacagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)