BAC Information

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BAC

Clone NameMSMg01-295M06
Chromosome16 (Build37)
Map Location 57,858,800 - 58,033,984
singlet/doubletdoublet
Overlap geneLOC629342, LOC100043477
Upstream geneTmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik, Col8a1, LOC435480
Downstream geneDcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295M06.T7 (MSMg01no295_m06.b1)MSMg01-295M06.TJ (MSMg01no295_m06.g1)
ACCAG423568AG423569
length748753
length of high quality
(start - end)
231 (132 - 362)280 (79 - 358)
definitionCHROMAT_FILE: MSMg01no295_m06.b1 PHD_FILE: MSMg01no295_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:47 2005CHROMAT_FILE: MSMg01no295_m06.g1 PHD_FILE: MSMg01no295_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,858,800 - 57,859,030)(58,033,739 - 58,033,984)
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTCTTTCTTTCCCTTTTCATTAGCAGCACTTACACAAAATGAG
TCCATGGAAAAAGTCAGGTTTTACCACGGTAAGAGCTGCATGTTTTAAGT
CTTTGGATTACTTAGGATTGATCACCAGTCTCCTAAGGCTTTGCAGCCTC
CACTGTTCAATCTTAGATGCCATCTAAATGCTTGTCAGCTGATCAGCCAC
AAGGTACCCGCTCTGCAAAGTGCCTGGAAGACACTAAGTTAGTCTTAGTC
CCTTGCCAAGGAGGGAGCAGATAATTCAGTCAGTGGTGTTCGTTCTGAGT
AAGCGTCCTGCTTTCTTGTATTTCCCGCCCCCTCCCTTGTTGGGTCTGAG
CAGAAAACACTTGCCAGNCCTCAGTATAATCAAAGATGGCAAAACACAGA
TGTTAATGCCTTTTAATCAGCTAGGCTTTTCGAGAACTTGGGCTGAAGCC
TGGAATAATCCTGCTTAGCCCTACAATGAATGGATGGTGTACAAGCTTTA
AGAATGTTCGTTTTAATTAATGATGGCGATAGAAGTGGCAGTCTCGTTCA
CAGCGATAGAAGAAATCACCAAGTCATGTGTTGTGTGGGCATGTGGGAGT
GTGTCTTGACCTCCCCACATGGTTCACATTCTCAACTGGCTTATTCCATT
TCCTTCTAGCTTCTGTATCATTTAGCAATAAGCCTGGTGCAAGACTAG
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGGTTTATATATATATATA
TATATTTAAAAGGATGTGATGTTAGGAAGAAGATGTGTTAGAAGTTGGTG
GGTAGAGTTAGAAGGACTGGATATAAACAAGATAAACTGTATCCATGAAT
GAAGATATTGAAGAATAAAAATAAATAAATAAAAGTACCATGTTGTAGAC
ATGAAGATCTATAAAAATTCCTATAGTGGGATTTTGTTTATTTGTTTGAT
CTACTTTTCTTGTTTGGTGCTGAGGATTGAAAGAAAATGTTCATTGATAA
AGCTGAGCGCTTTTGAATAACTCTCCATGCAAATCCCCGCCATGATAAAT
TTTGTTCCTTATATTGGCCCCCTCTAAAAGAAGAAAACACAGGGCGGGGG
GGGGGTTTACAATTTTCTGTAGTCTGTTGCTGATCTGCCTCTACTATTTC
CTACTACTGTGAGCCTCTTATCTTACCTTGCACCATCGAGTTTACCATCG
ACCTCTGATATAGCCCCATCTTCTCGCGGATTTTATTTCTGACAACCCCC
TCTTTTCCCATCCTTTCTTATTTACTTCTTCTACCGCTTTACACTTCTCT
CTCACCTCCCTCGTTGTTTTTTCTCCCTCCTTCATTGCTGCCCTTTTTTT
TTCACTTTTTTCCCCTTACCGCTTTTTCCTTTTCCCTCCTTTTTTCCCCT
CCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_m06.b1 MSMg01no295_m06.b1 CHROMAT_FILE:
MSMg01no295_m06.b1 PHD_FILE: MSMg01no295_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:47 2005
         (231 letters)



>mm_chr16_57858600_57859230
          Length = 631

 Score =  439 bits (227), Expect = e-128
 Identities = 230/231 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagctgcatgttttaagtctttggattacttaggattgatcaccagtctcctaaggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagctgcatgttttaagtctttggattacttaggattgatcaccagtctcctaaggctt 260

                                                                       
Query: 61  tgcagcctccactgttcaatcttagatgccatctaaatgcttgtcagctgatcagccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcagcctccactgttcaatcttagatgccatctaaatgcttgtcagctgatcagccaca 320

                                                                       
Query: 121 aggtacccgctctgcaaagtgcctggaagacactaagttagtcttagtcccttgccaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtacccgctctgcaaagtgcctggaagacactaagttagtcttagtcccttgccaagg 380

                                                              
Query: 181 agggagcagataattcagtcagtggtgttcgttctgagtaagcgtcctgct 231
           ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 agggagcagataattcagtcagtggtgttcggtctgagtaagcgtcctgct 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no295_m06.g1 MSMg01no295_m06.g1 CHROMAT_FILE:
MSMg01no295_m06.g1 PHD_FILE: MSMg01no295_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:47 2005
         (280 letters)



>mm_chr16_58033650_58034329
          Length = 680

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 34  ggatgtgatgttaggaagaagatgtgttagaagttggtgggtagagttagaaggactgga 93
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 335 ggatgtgatgttaggaagaagatgtgttaggagttggtgggtagagttagaaggactgga 276

                                                                       
Query: 94  tataaacaagataaactgtatccatgaatgaagatattgaagaataaaaataaataaata 153
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tataaacaagataagctgtatccatgaatgaagatattgaagaataaaaataaataaata 216

                                                                       
Query: 154 aaagtaccatgttgtagacatgaagatctataaaaattcctatagtgggattttgtttat 213
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 aaagtaccatgttgtagacatgaagatctataaaaattcctatagtgggattttgtttat 156

                                                                       
Query: 214 ttgtttgatctacttttcttgtttggtgctgaggattgaaagaaaatgttcattgataaa 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ttgtttgatctacttttcttgtttggtgctgaggattgaaagaaaatgttcattgataaa 96

                 
Query: 274 gctgag 279
           ||||||
Sbjct: 95  gctgag 90


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)