BAC Information

Click to search

BAC

Clone NameMSMg01-295N10
Chromosome16 (Build37)
Map Location 83,709,482 - 83,709,810
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545172, LOC100039572
Downstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893, LOC100039634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295N10.T7 (MSMg01no295_n10.b1)MSMg01-295N10.TJ (MSMg01no295_n10.g1)
ACCAG423619AG423620
length752753
length of high quality
(start - end)
235 (123 - 357)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no295_n10.b1 PHD_FILE: MSMg01no295_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:53 2005CHROMAT_FILE: MSMg01no295_n10.g1 PHD_FILE: MSMg01no295_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAATCTCAGGTGACAGAAG
ATGCTGGTGAGGATGTGGAGAAAGAGGAATACTACTCCATTGTTGGTGGG
ATTGCAAGCTTGTATAACCACTCTGGAAATCAGTCTCATGGTTCCTCAAA
AATTGGACATAGTACTATCGTATGATCCCGCAATACCTCTCCTGGGCATA
TATCCTTAAGTTGNCTTCCNNGGCAAGTCCCACTCATGCTCCACTATGTT
CATAGCAGCCTCCCCCATAATAACCCACCTAAAAAAATGAGGGGGGAGGG
GCCTCAACACATGAATTGGATACAGAAAATGTGGTACATTTACACAATGG
TGTACTACTCATCTATTATTAAGAATGCATCCATGATATTCCTAGGCTTA
TGTATGCACCTGCAGGTCATCTTCCTGTGTGAGGTATCTCATTCCCTTGA
GGAATTCCTCCACTTTGTGTTCCCTTATTACCGGCATACTATCCCATTAC
CTATGATACCCCAGAAATTAACGTTCACTTTCGCTATCGGCCTGCTTCTC
CTGACCTACTTATCACCTAACCGTCGATTTCCTTGCCCCCTTCCTATCTA
TG
CTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCTGCTTGTTGGTAACAGAAGATTAA
AAAAACTAAAAGAGAGAAAGGAAGAAAGAGAAAAACAGTAACAAAGTGGA
AGAGGGACATTATAACAATATATTAGGTATATGAATTTTCTTTCAAACAG
TAGCAATCAAGGGATGAGGAAACCATTTGCAGACATATTAATACTTAAAT
CCTTTTAATTGTCAGACTTGAAACATCTTACTTATATACTTACGTCTATA
CTTCTATAGAGGGTAAATACATTATTGAAACAGGGAGCATATGACTGAAC
AAAGAAAACTGCTTAATTTCCCCCCCCCGCCCCCTTGGTATTTTGTGCAT
TTTCTATTCAATTTGCCTCTAAATAAAAAAAAAAATATTCGGGGGGGGGG
AGGATTCTTTGATGTATTTTCCTTATCTTATTATAAATATATGTTATTAA
GGGCAATGTCATAGCTAAATTTCTGAAAAGATTTGATAGCAAGATGTCTG
TGTAAGCTTCAATTACAGAAACTAACCATAAACACTCTACGCATTTGGAA
CTGTCGCCCGGGTTCGGAGCTAGACATCATTGGGAAAGACATTTGTACCT
ATGAAGCCCTTCTTAGGTGCCCTTTAGACCGAATGACCTGCTATGTTCCC
GTGATATTTGCGCGTTTTCTGGCTATGTCGTGTCCCTCCTTTGCAACACA
TCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_n10.g1 MSMg01no295_n10.g1 CHROMAT_FILE:
MSMg01no295_n10.g1 PHD_FILE: MSMg01no295_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:53 2005
         (287 letters)



>mm_chr16_83709282_83709969
          Length = 688

 Score =  389 bits (201), Expect = e-112
 Identities = 278/329 (84%), Gaps = 42/329 (12%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctgcttgttggtaa-cagaaga-ttaaaaaaactaaaagagagaaaggaagaaagaga 58
           |||||||| |||| || ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 acctgcttattgggaaacagaagaattaaaaaaactaaaagagagaaaggaagaaagaga 260

                                                                       
Query: 59  aaaacagtaacaaagtggaagagggacattataacaatatattaggtatatgaattttct 118
           ||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 261 aaaacagtaacaaagtgaaagagggatattataacaatatattgggtatatgaattttct 320

                                                                       
Query: 119 ttcaaacagtagcaatcaagggatgaggaaaccatttgcagacatattaatacttaaatc 178
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaaacagtagcaatcacgggatgaggaaaccatttgcagacatattaatacttaaatc 380

                                                                       
Query: 179 cttttaattgtcagacttgaaacatcttactt---------------------------- 210
           |||||||||||||||||||||| |||||||||                            
Sbjct: 381 cttttaattgtcagacttgaaatatcttacttctatacttatgtcttacttctatactta 440

                                                                       
Query: 211 -------atatacttacgtctatacttctatagag-----ggtaaatacattattgaaac 258
                  ||||||||||||||||||||||||||||     ||||||||||||||||||||
Sbjct: 441 tgtaagtatatacttacgtctatacttctatagagtatatggtaaatacattattgaaac 500

                                        
Query: 259 agggagcatatgactgaacaaagaaaact 287
           || ||||||||| ||||||||||||||||
Sbjct: 501 agagagcatatggctgaacaaagaaaact 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)