BAC Information

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BAC

Clone NameMSMg01-296C18
Chromosome16 (Build37)
Map Location 62,488,823 - 62,489,053
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296C18.T7 (MSMg01no296_c18.b1)MSMg01-296C18.TJ (MSMg01no296_c18.g1)
ACCAG423859AG423860
length728751
length of high quality
(start - end)
294 (432 - 725)232 (134 - 365)
definitionCHROMAT_FILE: MSMg01no296_c18.b1 PHD_FILE: MSMg01no296_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:18 2005CHROMAT_FILE: MSMg01no296_c18.g1 PHD_FILE: MSMg01no296_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTCATTTGTTTT
TCTGAAGTCCACCAGTTTTGCCGAGTATAGCCTTTTGTAGAAGGATCTGA
TGGTGTTTTGGATTTCTTCAGGATCTGTTGTTATGTCTCCCTTTTCATTT
CTGATTTTGTTAATTAGGATTTTGTCCCTGTGCCCTCTAGTGAGTCTAGC
TAAGGGTTTATCTATCTTGTTGATTTTTTCAAAGAACCAACTCCTCGTTT
GGTTAATTCTTTGAATAGTTCTTCTTGTTTCCACTTGGTTGATTTCACCC
CTGAGTTTTANTTTTTCCTGCCGCCCACTCCTCTTGGGTGAATTTGCTTC
CTTTTTTTCTAGAGCTTTTACATGAGATGACAAGCTGCTAGTATGTGCTC
TCTCCAGTTTATTCTTGGAGGCACTCAGAGCTATGAGTTTCCCTCTTAGA
AATGCTTTCATTGTGTCCCAAAGGTTTGGGTACGTTGTGGCTTCATTTTC
ATTAAACTCTAAAAAGTCTTTAATTTCTTTCTTTATTCCTTCCTTGACCA
AGGTATCATTGAGAAGAGTGTTGTTCAGTTTCCATGTGAATGTTGGCTTT
CCATTATTTATGTTGTTATTGAAGATCAGTCTTAGGCCATGGTGGTCTGA
TAGGATACATGGGACAATTTCTATATTT
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAGATGCCATTTGGAAGTACACAGC
CTCTCTTAGTCCTTAGCTTTTTCCCACTGGGGAGACTTGTTTCAAAAGTT
GAAAGTTTGAGGAGCATTAAGAGACAGAAAAAGGACTACCATGTATTGTG
ATCTACCCTCTCGATGTTAAGCCATGTCACTTCTAGTAGTCTTTGTGTTG
TGACACTTAAAAATATTTGTTCATAGGACACAGACTAGATGCTACCCTTT
GCTAGAGAAAAGCCGCCCTCAGACTAAATGAACATTTGTAACATAGGATG
TACTCCATCTTTTGTTTTTATGTTTTACAGATAGACACGACTTTTTGTTA
AATACTGTACATAAAACACCGCGTTTAGAATTTCCAAAAGTGTTCTTATC
TCTCATTCATGGGCGAGAAACCCGAAGACAAAGATAGTAAATAAATTGGG
TGAAAAAAATGATAAACACAAGAACAGTTAGTTGGATTCAGGATGCTCTA
TCACAAATACAGTATGCCCAGTTACTTGGAATATAAAGCCCTTATTTTGT
TGTTGCTGCTCTTTTTTTGATTTTTAAAAATTCTCACAATAAAGATTTGT
GGTAATAATGATAGGAGTTATCAGAATCTAATATATACCGAAAACAACCC
CAACTTTCTAGAAAGACATTGTGAAACCTAAAAAAGATAAGAGTCAGCAT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_c18.g1 MSMg01no296_c18.g1 CHROMAT_FILE:
MSMg01no296_c18.g1 PHD_FILE: MSMg01no296_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:18 2005
         (232 letters)



>mm_chr16_62488623_62489254
          Length = 632

 Score =  439 bits (227), Expect = e-128
 Identities = 230/231 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacttgtttcaaaagttgaaagtttgaggagcattaagagacagaaaaaggactaccatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gacttgtttcaaaagttgaaagtttgaggagcattaagagacagaaaaaggactaccatg 372

                                                                       
Query: 61  tattgtgatctaccctctcgatgttaagccatgtcacttctagtagtctttgtgttgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tattgtgatctaccctctcgatgttaagccatgtcacttctagtagtctttgtgttgtga 312

                                                                       
Query: 121 cacttaaaaatatttgttcataggacacagactagatgctaccctttgctagagaaaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cacttaaaaatatttgttcataggacacagactagatgctaccctttgctagagaaaagc 252

                                                              
Query: 181 cgccctcagactaaatgaacatttgtaacataggatgtactccatcttttg 231
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgccctcagactaaatgaacatttgtaacataggatgtactccatcttttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)