BAC Information

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BAC

Clone NameMSMg01-296G12
Chromosome16 (Build37)
Map Location 64,001,206 - 64,001,437
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha3, LOC100043540
Downstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296G12.T7 (MSMg01no296_g12.b1)MSMg01-296G12.TJ (MSMg01no296_g12.g1)
ACCAG424027AG424028
length750737
length of high quality
(start - end)
233 (125 - 357)234 (132 - 365)
definitionCHROMAT_FILE: MSMg01no296_g12.b1 PHD_FILE: MSMg01no296_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:35 2005CHROMAT_FILE: MSMg01no296_g12.g1 PHD_FILE: MSMg01no296_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATGGG
CAAGCAACGAACCATTAGCTCCCACGCCATATCAGGTGCTGAAACGTCAC
GCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTTGGGATCTTCCTGA
GAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGTCT
TTCTTGCCGGTCGAGCGGGACGCAATATCTGGAGTCAGTTGTTATAGTCT
CTGGTTAGAGCTTGTTCCTCTCATGATTCTCTTATTCTCTATCAGCAGAC
CTGGGATGTTTGCTCTCTCCTCCCCCCCCCCGGTCAGAGCACTCTCTGCA
GGCAGGCTCTCTCTTTCAGGGAAAGAAAACAGATATCTGGTATTTGGACT
TGCCTCCTGGCAAAAGATGAAGGCCTGAATCAGGACCTGTCCCAGAAGCT
GTTAGCTTCTGTAGTCAACATTCGAACCTGTGCAGACTAGTCTCTGAGGG
ATCCAGGGACCAAGATGGCTCCCTCAGGTACTCTGCCAAAGCCCTCCGGG
GCAGGGAGGACACCTGTCCTCTGGCAGGGAAGGTGCCCAGATGTCTGGAG
CCCGAAACAGGGACTGTCTCAGAAGCTTTGTGGCTCCCACCTGTCCCAGA
AGCTGTTTGCTTCTGTAGTCCACACTCTTCAATGAGCAGACTATTCTTGG

CCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGGAAACAACTAGCCCATCCGT
CTCTGACATCCCATGCTGTTTCCCCTAATCCGAAACAGGGACTCAAATAT
TTTCAGTTTCCTTGGGTGGAAAAATCCTGTTTAAATGCTTCACATTAAGT
AGTTATAGACACTAGGTCTACAGGGACAGGTAAGCTGTCCCATTTTTTAA
GACATTAACATCATAATTCAGTGAAATAATTATGAATAAGAAGTGCATTG
ACATGGGCATTTTCTCATCATTTAGGTTATAAATACTGGGTAGCATCTAT
TTTCTATTTACTCTTTCTGAGTACATTTCTCTCCCTCCCTTTCCAATTTT
ATGCTAAAACAATTCAACTAATATTCCATTGCTCCTGGAAAAGAGACATT
CTTCGTTTCAGTCAACTATATATATTCTATATTTGTTTCAACTCACTTTT
ATTAATTACCTTATTCAGATCCTTACCTATCAGTGTTTATTTCATCTAAG
GAACAATAATATGATACAATTGTCTCATATTTTANAAGTATTATTAGTTT
TCATATATATGGGAATGCCTTGTAGAGGTCAGAGCACAATTTTGTGAAGT
TGGCTCTTTCCTTTTATTTTATTTTATTTTATTTTTTTTGCGGGTTCTAT
GGTTAAATTGAGAATGCTAGGCTTTCATAGCAAGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_g12.g1 MSMg01no296_g12.g1 CHROMAT_FILE:
MSMg01no296_g12.g1 PHD_FILE: MSMg01no296_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:35 2005
         (234 letters)



>mm_chr16_64001006_64001639
          Length = 634

 Score =  449 bits (232), Expect = e-131
 Identities = 232/232 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaacagggactcaaatattttcagtttccttgggtggaaaaatcctgtttaaatgcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaacagggactcaaatattttcagtttccttgggtggaaaaatcctgtttaaatgcttc 260

                                                                       
Query: 61  acattaagtagttatagacactaggtctacagggacaggtaagctgtcccattttttaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acattaagtagttatagacactaggtctacagggacaggtaagctgtcccattttttaag 320

                                                                       
Query: 121 acattaacatcataattcagtgaaataattatgaataagaagtgcattgacatgggcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acattaacatcataattcagtgaaataattatgaataagaagtgcattgacatgggcatt 380

                                                               
Query: 181 ttctcatcatttaggttataaatactgggtagcatctattttctatttactc 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctcatcatttaggttataaatactgggtagcatctattttctatttactc 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)