BAC Information

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BAC

Clone NameMSMg01-296I22
Chromosome16 (Build37)
Map Location 37,131,883 - 37,292,798
singlet/doubletdoublet
Overlap geneStxbp5l
Upstream geneStfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq
Downstream geneGtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296I22.T7 (MSMg01no296_i22.b1)MSMg01-296I22.TJ (MSMg01no296_i22.g1)
ACCAG424137AG424138
length730757
length of high quality
(start - end)		602 (129 - 730)297 (77 - 373)
definitionCHROMAT_FILE: MSMg01no296_i22.b1 PHD_FILE: MSMg01no296_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:47 2005CHROMAT_FILE: MSMg01no296_i22.g1 PHD_FILE: MSMg01no296_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,131,883 - 37,132,479)(37,292,502 - 37,292,798)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCCAATTCCCACCAACCATATTATCTGACATTTTCAACCATTTA
ATTCTTGGCTTGCAGGTTGTACCCAATCAGATGAGGGATAATTTTGTTAT
CTTTTGCCAACCTCATATCTGCTCTACTTTTTCCTCTCTTGCCCTCCCCA
AAGTTAGCTTCCCCTTCACTATGCTAACACTTGCTTTCTTAAAGGGTCTC
ATGCAGCCTAGGCTGCCCTCCAACTTACTATGTAGCAGAGGATTATCTGG
ACCTTTGGAAACTTCTGCCTTCACTGCTGGGATTCTAGGCATGCTCCAGT
AATGACCACTTTATAGTTTTGCTCCTGGGACCCAGTGCTTTGGCCTGTTT
GTAGTGTTTGCTACATCTTGACTACCTCTTTTGTTGTGGTGCTTTCTTGT
CTTTATAATAGCAGGTTGCTGTCCTGGTCCTTGTTTTATCTCTCTGATGA
CATCTCAACCCCCTCCTTTGGGCTCTCTTTCCTCCAGTGCACAAATGCAG
AGACTGGCCCCTATCTATCCTTAGCACAGTCTATTGTTCATTTCTTTTTA
TAAGATCCATTGGTGATCTTTGCTGTTCTCAGTTTTCCTAGATAACACTC
AAGCCCATGTTTTTCCAAGAAAGCAGACTTTAAATTGTTAAGCCATATGC
TGGACAGCTTAGGAGTGCCTCAAGTGTCAN

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATTAGAGAGACTAATTACAATG
TTAGTAGATGAATCATTGAATTTATTACTTCATACGCAGTAGTCCTCATG
TCTCTAGATATTGAACAGGTCTCAGAGCTGGCCAGAAAGCCCATTATGAA
GATGAAGATAGAATGCTGAAACTCAAGGAAGTCTTGATATGGTGGCACAT
GTCTGTGATTCCAGCACTCCTATGTTAAGATGGGAGGGTAGAGACAAGAG
AAGGGAAAAGAAGGATAGCTAGCCTGAAGTATGCAGTACTATGGCAAGTA
AGAGAAATGCTGCCTTATGTGAGGTGGCAACAGCGGCCCAGTACCTGAGA
TTGTCCTCTGACCTCTACATTCCCATACACTCACACACACACACACACTC
ACACACACACACACACAGAGAGAGAGATAGATAGATAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAAAGAGAGAGAAAG
AGAGAGAGAATAAAGTGATTCTCTGACCTTAACAGTTTTCCTCCTAATAC
ATAATGCCAAGCATCTGAAGAAAGTACAGATAACTAAACTACTACTTCAC
CACGAACTCTGAAATTTATGTTCATTATGTACCTAATTTGTCTTTAAAAT
GACTTTTATTTAAATAAATAAACATTGGAGCTCAGTGAGAAGATACTAAA
TTTTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_i22.b1 MSMg01no296_i22.b1 CHROMAT_FILE:
MSMg01no296_i22.b1 PHD_FILE: MSMg01no296_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:47 2005
         (602 letters)



>mm_chr16_37131679_37132680
          Length = 1002

 Score = 1108 bits (573), Expect = 0.0
 Identities = 591/597 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gagggataattttgttatcttttgccaacctcatatctgctctactttttcctctcttgc 64
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gagggatgattttgttatcttttgccaacctcatatctgctctactttttcctctcttgc 264

                                                                       
Query: 65  cctccccaaagttagcttccccttcactatgctaacacttgctttcttaaagggtctcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctccccaaagttagcttccccttcactatgctaacacttgctttcttaaagggtctcat 324

                                                                       
Query: 125 gcagcctaggctgccctccaacttactatgtagcagaggattatctggacctttggaaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 gcagcctaggctgccctccaacttactatgtagcagaggattatctgcacctttggaaac 384

                                                                       
Query: 185 ttctgccttcactgctgggattctaggcatgctccagtaatgaccactttatagttttgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctgccttcactgctgggattctaggcatgctccagtaatgaccactttatagttttgc 444

                                                                       
Query: 245 tcctgggacccagtgctttggcctgtttgtagtgtttgctacatcttgactacctctttt 304
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 tcctgggacccagtgctttggcctttttgtagtgtttgctacatcttgactacctctttt 504

                                                                       
Query: 305 gttgtggtgctttcttgtctttataatagcaggttgctgtcctggtccttgttttatctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttgtggtgctttcttgtctttataatagcaggttgctgtcctggtccttgttttatctc 564

                                                                       
Query: 365 tctgatgacatctcaaccccctcctttgggctctctttcctccagtgcacaaatgcagag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 565 tctgatgacatctcaaccccctcctttgggctctctttcctccagtgcataaatgcagag 624

                                                                       
Query: 425 actggcccctatctatccttagcacagtctattgttcatttctttttataagatccattg 484
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 actggcccctatctatcctcagcacagtctattgttcatttctttttataagatccattg 684

                                                                       
Query: 485 gtgatctttgctgttctcagttttcctagataacactcaagcccatgtttttccaagaaa 544
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgatctttgctgttctcagttttcctagataacactcaagcccatgtttttccaagaaa 744

                                                                    
Query: 545 gcagactttaaattgttaagccatatgctggacagcttaggagtgcctcaagtgtca 601
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcagactttaaattgttaagccatatgctggacagcttaggagtgcctcaagtgtca 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no296_i22.g1 MSMg01no296_i22.g1 CHROMAT_FILE:
MSMg01no296_i22.g1 PHD_FILE: MSMg01no296_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:47 2005
         (297 letters)



>mm_chr16_37292302_37292998
          Length = 697

 Score =  551 bits (285), Expect = e-161
 Identities = 294/297 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattagagagactaattacaatgttagtagatgaatcattgaatttattacttcatacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 497 aaattagagagactaattacaatgttagtagatgaatcattgaatttattatttcataca 438

                                                                       
Query: 61  cagtagtcctcatgtctctagatattgaacaggtctcagagctggccagaaagcccatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cagtagtcctcatgtctctagatattgaacaggtctcagagctggccagaaagcccatta 378

                                                                       
Query: 121 tgaagatgaagatagaatgctgaaactcaaggaagtcttgatatggtggcacatgtctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgaagatgaagatagaatgctgaaactcaaggaagtcttgatatggtggcacatgtctgt 318

                                                                       
Query: 181 gattccagcactcctatgttaagatgggagggtagagacaagagaagggaaaagaaggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gattccagcactcctatgttaagatgggagggtagagacaagagaagggaaaagaaggat 258

                                                                    
Query: 241 agctagcctgaagtatgcagtactatggcaagtaagagaaatgctgccttatgtgag 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 257 agctagcctgaagtatgcagtactatggcaagtaagagaaatgctgccttacgtgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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