BAC Information

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BAC

Clone NameMSMg01-296N09
Chromosome16 (Build37)
Map Location 69,008,912 - 69,009,186
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626609
Downstream geneSpeer2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296N09.T7 (MSMg01no296_n09.b1)MSMg01-296N09.TJ (MSMg01no296_n09.g1)
ACCAG424335AG424336
length759746
length of high quality
(start - end)
---281 (78 - 358)
definitionCHROMAT_FILE: MSMg01no296_n09.b1 PHD_FILE: MSMg01no296_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:08 2005CHROMAT_FILE: MSMg01no296_n09.g1 PHD_FILE: MSMg01no296_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAACTACTATAGGGAGAGGATCCGCGGAATTCTTTTGACGACTGTAGCAT
CTATCCAGGACCACTTGCATGATCGAGTCAACAAGGAGCCAGTGGTATGG
GCACACAGCTGCGACACATCAGACACGCCTCTCATAACTCAAGGACAGCT
AACGAGTAATGGGGAAGATATAGTACGAAGCCTTGCATTTTCCGTTATCT
ACGAGCAACTAAGCAAGACTTACCCTGCGTGTCATTCTGTGGACCTGTGT
GGGCGTGTGAGTGAATGAGGAGAGCGGGTGCGCCTCCGTGATACATTGCT
TGTGCTCCCTGATTACCGGAACCTACCCGAAAGGTCTTTTTGTGGTTTTC
CCCCCCCCCCCCCTGAGGAGGATGCTTAAAATTCCGAAGTTCTGTCCCCC
CCCAAAAAAAAAAAAAACAATGAGGGATGGAGTGGTGGGACACGCATCTT
TCTGAATTTACCATCCGGGGCAATCTGGCGCACCATCACTCAATGATCAT
TCTTCCGGATTGAGTATACGTTTTGCACGGTGTTGCCAACTCTACCTCGC
ACTCTTCCTTACATCGAATCCGCTCACGCTTGCCTCGCTTCCCACAGAAC
GAATATCTTACTCTCGCCCACATGGCTCTCCTTCTCACCCTCCGCCGTTT
TCACCGCAGGCCCCCCTGTTTTCGTTCTGCCCGCCCTACTGTTTTTCGCT
TTAAACTCTCCCTTTCTTCTCGCTATCTGGAACTTTTTTCCCTCCTTACT
TTCCTTGTT
CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAATCATTTGACTCATTAATT
CATACGTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTATTTCCTGATA
TAGGAACAACTCATGAGAATAATGGTAGATTTTATTTATGTTGGTTTTAT
GTGATTTGTTTTTGAATATGAAATACCACTTTAGAGACAAGAGAGCTGTT
TTTTTTTTATCATGTGATACTGATAATTTTAATCATGTACAACAGAGTGT
GAAGTTCAGAACATATGTTTGTTTTTTCATTGATCCTTTAAGTATCATGG
AGACTTCATGTCNTTGANTTTCCCGGGACATTCCCCTTTATTGAGTATTT
ATCCTCACATGATATACCCCCCTTATTAAAAAAAAAACAGAGGTGGGGGG
GGGGGGGAATTCCCAAATAACTGGACCTTGTGACATATTCCCTTAATCCT
GGCACTATTAAGTCATAGGGATATGCATCTCTTAGTTCCGGATTATCCTG
GTCCTCTGTTCCCGTTCCTGGATAGTTATGGCTAATCAAACTTTGTCTTA
TCTATGGAACAACAACCCCCTCTCTTATAATTTGACTCTAATCTTGTCTC
TTTCTTTTTCCTTTTCTCGTTCGTCTTCCTTATTTGTTTGACTAATCGAA
TGTTCGATATCATCACCACCCCCTCCTCACCCTCCTATTTTTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_n09.g1 MSMg01no296_n09.g1 CHROMAT_FILE:
MSMg01no296_n09.g1 PHD_FILE: MSMg01no296_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:08 2005
         (281 letters)



>mm_chr16_69008708_69009386
          Length = 679

 Score =  478 bits (247), Expect = e-139
 Identities = 271/281 (96%), Gaps = 6/281 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaatcatttgactcattaattcatacgttttttgtttgtttgtttgtttgtttgtttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |
Sbjct: 205 aggaatcatttgactcattaattcatacgttttttgtttgtttgtttgtttgttt----t 260

                                                                       
Query: 61  ttatttcctgatataggaacaactcatgagaataatggtagattttatttatgttggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatttcctgatataggaacaactcatgagaataatggtagattttatttatgttggttt 320

                                                                       
Query: 121 tatgtgatttgtttttgaatatgaaataccactttagagacaagagagctgttttttttt 180
           |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 321 tatgtgatttgtttttgaatatgaaatatcactttagagacaagagagctattttttttt 380

                                                                       
Query: 181 tatcatgtgatactgataattttaatcatgtacaacagagtgtgaagttcagaacatatg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 -atcatgtgatactgataattttaatcatgtacaacagagtgtgaagttcagaacatatg 439

                                                    
Query: 241 tttgttttttcattgatcctttaagtatcatggagacttca 281
           |||||  |||||||||||||||||||| |||||||||||||
Sbjct: 440 tttgtcctttcattgatcctttaagta-catggagacttca 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 679
Length adjustment: 9
Effective length of query: 272
Effective length of database: 670
Effective search space:   182240
Effective search space used:   182240
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)