Query= MSMg01no297_j04.b1 MSMg01no297_j04.b1 CHROMAT_FILE:
MSMg01no297_j04.b1 PHD_FILE: MSMg01no297_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:02 2005
(612 letters)
>mm_chr16_29640442_29641453
Length = 1012
Score = 934 bits (483), Expect = 0.0
Identities = 589/659 (89%), Gaps = 56/659 (8%)
Strand = Plus / Plus
Query: 1 aattaaggttgctttgctttatttttaatcttttatctcctccgttttgcacaacttctt 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 163 aattaaggttgctttgctttgtttttaatcttttatctcctccgttttgcacaacttctt 222
Query: 61 actctgagctgtgtacacagctctctctgtctttaaacaaattctagcgagtatactacc 120
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 actctgagccgtgtatacagctctctctgtctttaaacaaattctagcgagtatactacc 282
Query: 121 aggaattcggttttcagttttttaagtattttattattgtgagggcggtgtggggggaac 180
|||||||||||| ||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct: 283 aggaattcggttctcagttttttaagtattttattattatgggggtggtgtggggggaac 342
Query: 181 atgttaaaaactgtcccaaccagaaactataccattccccttgcagctcagtaggctgtt 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atgttaaaaactgccccaaccagaaactataccattccccttgcagctcagtaggctgtt 402
Query: 241 gagtgtggcggtttttgc-----agtgtcttgagagctctgggctgtcttctcctacccg 295
||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 403 gagtgtggcgg-----gcggggcagtgtcttgagagctctgggctgtcttctcctacccg 457
Query: 296 tgtgctctgagttcactgtcagtgcacttccatccagcttctcagccagcagggtgggct 355
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 458 tgtgctctgagttcactgtcagtgcacttgcatccagcttctcagctagcagggtgggct 517
Query: 356 gcagttcacttccgttgctttgtacagacttggttctaaaatactcattcagagaacaag 415
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gcagttcacttctgttgctttgtacagacttggttctaaaatactcattcagagaacaag 577
Query: 416 cgacattaataaaactagaacttccggaatggttacttactctatagagtccctgggacc 475
||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||
Sbjct: 578 cgacattaataaaactagaacttcctgaaaggttact----ctatagagtccctgggacc 633
Query: 476 cggag------------------------------------------agagtcgagccac 493
||||| |||||||||||||
Sbjct: 634 cggaggccatgttgtagcatgttgggtagtaacagtcactctccttgagagtcgagccac 693
Query: 494 ctgttgaggacctggccttgctgtgtgtgcttgtgccttcatagtgtcgtccttctccag 553
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ctgttgaggaccaggccttgctgtgtgtgcttgtgccttcatagtgtcgtccttctccag 753
Query: 554 agatgcccggactgtttcccttagatgcagtggatgatccttccatggggttctagcca 612
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 agatgcccggactgtttcccttagatgcagtggatgatccttccatggggttctagcca 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_j04.g1 MSMg01no297_j04.g1 CHROMAT_FILE:
MSMg01no297_j04.g1 PHD_FILE: MSMg01no297_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:02 2005
(602 letters)
>mm_chr16_29826435_29827436
Length = 1002
Score = 634 bits (328), Expect = 0.0
Identities = 479/602 (79%), Gaps = 111/602 (18%)
Strand = Plus / Minus
Query: 1 agttacttataatgaatgggtgtttatctgtcacaaacaggagggtctcaattgtctaca 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 564 agttacttataatgaatgggtgtttatctgtcacaaacaggagggtctcagttgtctacg 505
Query: 61 tataaaataagatgagatcatatgggtgacttcataattaacgtattaattgtacaggtt 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 504 tataaaataagatgagatcatatgggtgactttataattaacgtattaattgtactggtt 445
Query: 121 tgttagttccaccagagtgctttcatgcgtgtgtctgtcatgcttggctcagtctacgct 180
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 444 tgttagttccaccagagcgctttcattcgtgtgtctgtcatgcttggctcagtctacgct 385
Query: 181 ctcaaatgcctctctgggacactctgaacaaaatcaaggttagaagtctaacttacagca 240
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 cgcaaatgcctctctgggacactctgaatgaaatcaaggttagaagtctaacttacagca 325
Query: 241 tgcaaaaaatgagaatttttagatatctaaagaacgatttcggaaaggtgaagttataca 300
||||||||| |||
Sbjct: 324 tgcaaaaaa----------------------------------------------ata-- 313
Query: 301 gctgcatgaagaaccacaggagcccaagtgctcagacctctggtgaccaaacacacacag 360
Sbjct: 313 ------------------------------------------------------------ 313
Query: 361 caggaatttttagatatctaaagaacgatttcggaaaggtgaagttatacagctgcatga 420
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 312 ---gaatttttagatatctaaagaatgatttcggaaaggtgaagttatacagctgcatga 256
Query: 421 agaaccacaggagcccaagtgctcagacctctggtgaccaaacacacacagcaggttctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agaaccacaggagcccaagtgctcagacctctggtgaccaaacacacacagcaggttctg 196
Query: 481 gtggctggagctgacatgctgaagaagccggggtggaccaggaagatttccttggcctgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gtggctggagctgacatgctgaagaagccggggtggaccaggaagatttccttggcctgg 136
Query: 541 gctgctatggtcagtggcagatatgatcaggagacagcttttctctctcgaaccactggg 600
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 135 gctgctatggtcagtggcagaaatgatcaggagacagcttttctctctctaaccactggg 76
Query: 601 aa 602
||
Sbjct: 75 aa 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
