BAC Information

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BAC

Clone NameMSMg01-298E02
Chromosome16 (Build37)
Map Location 83,298,682 - 83,299,069
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665260
Downstream geneEG545172, LOC100039572, EG621729, LOC640489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298E02.T7 (MSMg01no298_e02.b1)MSMg01-298E02.TJ (MSMg01no298_e02.g1)
ACCAG425357AG425358
length722736
length of high quality
(start - end)
---517 (76 - 592)
definitionCHROMAT_FILE: MSMg01no298_e02.b1 PHD_FILE: MSMg01no298_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:54 2005CHROMAT_FILE: MSMg01no298_e02.g1 PHD_FILE: MSMg01no298_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTGCANGAGAGAGCGCGGAATTCCAGCT
CATTGCATAGAAGATGTAGGTCACATTCTGTCCTGAAGCTGACCACTTTA
TGCTCATGTCTTACTAGATTTGAAAGTGATATTGTGGTATATACTTGGTA
CACCCACTTTCAGGATAATGACTCAGGAGATTTTGGTAGAGGCCAGCTTG
AGATCTATAGAGAGACTTTCTTTAATAAATAATAGCCTTAGAGGACACTT
TAATTTTCATACCAATAAACATATCTATGTTTCTGACTCATAAAACCTGA
AATAATATACTGATTTTTCATTATCAGACAGCTATCGATTCTAAATAATC
TTTGTCAGATACTTACAAAGCTACATAAGTTTGTACAGATAAGATTTTTT
GTCTTTAAAAATCAGGACAATACGAAAACTGTTTTAATTTAAAAAACTAT
ATCATTAACAACAACTAAAACCTAGTACCAGTAGTGGCTATAGTATATTA
GTACGATAATCTACTTATGAACTTTTATGAATTTGTAAAGCAGGTATATT
TTCCCCTTTCATTACATTTCAAAGATTAAGCTTACACATTGATATTTTAC
TATCATGGAATTCACAACGTAAATGTGAAAATATTGTGCCTGTGGCGAGA
TTACAGTGCTGCGATATACTTGGAAAACTCCGTAGCATTTGCTGCACTAA
ATTTTAGGGATGATGGCCTCCG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGACTACCTAATGGCTG
AGAAGCACCTAAAAAAATGTTCAGGGTCTTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAGGAT
AAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGGAAAAGGAA
CACTCCTCCATTTTTGGTGGGATTGCAAGCTTGTACAACCACCTGGAAAT
CAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACTAGAGGATCCC
GCAATACCTCTCCTGGGAATATATCCAGAAGATGTTCCAACTGGTAAGAT
GAACTCTACTTTTAAATAGAGCATTAGCCACTCTTATTCCTCCTGTCCTA
TGCTTTCCTCCAGGAGCTACTTATCAGTTTCAATCCCTATTTTGTATCCA
ATTTGTTCCTATTTTACATCCTTATCTATCACTGTATCTTCTAAAATAGT
GTTTTAAAATGCGTGTATGTGTGTGCTGTGTGTATGTGTATTACTGTAAG
CAGTACTAAATATAAATCTTATCTTTGTGTATTTATTTTTCAAAAAAACA
GCATCACGTGTGGTATATATTCATTTTCTATGAACTAAAACTCACTTTCA
GTTCTAATGGTCTCCAAGGTCATCTGTCCATTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_e02.g1 MSMg01no298_e02.g1 CHROMAT_FILE:
MSMg01no298_e02.g1 PHD_FILE: MSMg01no298_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:54 2005
         (517 letters)



>mm_chr16_83298153_83299069
          Length = 917

 Score =  665 bits (344), Expect = 0.0
 Identities = 377/388 (97%), Gaps = 1/388 (0%)
 Strand = Plus / Minus

                                                                       
Query: 131 attcaggtgacagcagatgctggcgaggatgtggaggaaaaggaacactcctccattttt 190
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 917 attcaggtgacagcagatgctggcgaggatgtggaggaagaggaacactcctccattttt 858

                                                                       
Query: 191 ggtgggattgcaagcttgtacaaccac-ctggaaatcagtctggcagttcctcagaaaat 249
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 857 ggtgggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctcagaaaat 798

                                                                       
Query: 250 tggacatagtactactagaggatcccgcaatacctctcctgggaatatatccagaagatg 309
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 797 tggacatagtactactagaggatcccgcaatacctctcctgggaatatagccagaagatg 738

                                                                       
Query: 310 ttccaactggtaagatgaactctacttttaaatagagcattagccactcttattcctcct 369
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 737 ttccaactggtaagatgaactctacttttaaatagagcattagccactcttattactcct 678

                                                                       
Query: 370 gtcctatgctttcctccaggagctacttatcagtttcaatccctattttgtatccaattt 429
           ||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||
Sbjct: 677 gtcctatgctttcctccaggagctacttatcagttttgatccctattttgcatccaattt 618

                                                                       
Query: 430 gttcctattttacatccttatctatcactgtatcttctaaaatagtgttttaaaatgcgt 489
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 617 gttcctattttccatccttatctatcactgtatcttctaaaatagtgttttaaaacgtgt 558

                                       
Query: 490 gtatgtgtgtgctgtgtgtatgtgtatt 517
           |||||||||||||||||||| |||||||
Sbjct: 557 gtatgtgtgtgctgtgtgtaggtgtatt 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)