Query= MSMg01no298_m19.b1 MSMg01no298_m19.b1 CHROMAT_FILE:
MSMg01no298_m19.b1 PHD_FILE: MSMg01no298_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:33 2005
(718 letters)
>mm_chr16_43091815_43092935
Length = 1121
Score = 1255 bits (649), Expect = 0.0
Identities = 702/725 (96%), Gaps = 13/725 (1%)
Strand = Plus / Minus
Query: 6 gaattcttagtctattccccctttaaagttaaacaaaaatcatatgaaaagattgccttt 65
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 gaattcttagtctaagctccctttaaagttaaacaaaaatcatatgaaaagattgccttt 1008
Query: 66 taataatgactacatgaagccaactctttaagacacaaataaacttatttatcacctggt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 taataatgactacatgaagccaactctttaagacacaaataaacttatttatcacctggt 948
Query: 126 tattgtgtcttgcaaaaaattacaatgttcaaatttttatttcatttgttgagttatagg 185
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 947 tattgtgtcttgcaaaaaattacaatgttcaaatttttatttcatttgttcagttatagg 888
Query: 186 gtcttcctggtgagtgcttttcttaagt-agtaaaattaacattgccgtatgaactgtat 244
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 887 gtcttcctgatgagtgcttttcttaagtaagtaaaattaacattgccgtatgaactgtat 828
Query: 245 ttgctgt-----g--tctcactaggggtttgatttattctatgatgctttcactgaatta 297
||||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 827 ttgctgttaaaagtatctcactaggggtttgatttattctatgatgctttcactgattta 768
Query: 298 atcattgcttagacaatcaaaatataataatttattcttgtaaaccagagactttcttgg 357
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 767 atcattgcttagacaatcaaaatataataatttattcttgtaaacgagagactttcttgg 708
Query: 358 gaagtcctatgtcacaagcagtagacatcagtgactgctaaagaaagacatgcaaattct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gaagtcctatgtcacaagcagtagacatcagtgactgctaaagaaagacatgcaaattct 648
Query: 418 aacattccagttctcaatataatactatttttttcttttt----cctttgtgctaactct 473
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 647 aacattccagttctcaatataatactattttttttttttttttgcctttgtgctaactct 588
Query: 474 gtcttcctaaaaagtttatggaacaaaaaaggattttttttttcatttcaagtgaaaaaa 533
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 587 gtcttcctaaaaagtttatggaacaaaaaagga-tttttttttcatttcaagtgaaaaaa 529
Query: 534 taaaactgctactttcattcaaaaacaagagttaatgcattttgaaagtacacagaatgt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 taaaactgctactttcattcaaaaacaagagttaatgcattttgaaagtacacagaatgt 469
Query: 594 aaaatttagttgaatcaaaatataaatattaaataaaagattacaccacaaatctgctac 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aaaatttagttgaatcaaaatataaatattaaataaaagattacaccacaaatctgctat 409
Query: 654 aagaaaatgtgaataagttctctccatatgagttcttctaagtcacaaagtaaatgagca 713
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aaaaaaatgtgaataagttctctccatatgagttcttctaagtcacaaagtaaatgagca 349
Query: 714 gtgag 718
|||||
Sbjct: 348 gtgag 344
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 718
Length of database: 1121
Length adjustment: 10
Effective length of query: 708
Effective length of database: 1111
Effective search space: 786588
Effective search space used: 786588
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no298_m19.g1 MSMg01no298_m19.g1 CHROMAT_FILE:
MSMg01no298_m19.g1 PHD_FILE: MSMg01no298_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:33 2005
(662 letters)
>mm_chr16_42906148_42907205
Length = 1058
Score = 1222 bits (632), Expect = 0.0
Identities = 655/668 (98%), Gaps = 12/668 (1%)
Strand = Plus / Plus
Query: 1 tcctttggaaaaatctactctttaaaaatttttaaatgtatacaatttatatagtcaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tcctttggaaaaatctactctttaaaaatttttaaatgtatacaatttatatagtcaaac 256
Query: 61 tgtataaacaacattaaggaagatgggcatctacacagatacaatactcagatatataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgtataaacaacattaaggaagatgggcatctacacagatacaatactcagatatataga 316
Query: 121 taaatagatagatagatag--a--tagtttggtttatcaggagttgttttgaaaaaaaaa 176
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 317 taaatagatagatagatagttagttagtttggtttatcaggagttgttttgaaaaaaaaa 376
Query: 177 agagacttccaaccagttctattttctgatgttcatcatcccaaagctgaaaatatatca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agagacttccaaccagttctattttctgatgttcatcatcccaaagctgaaaatatatca 436
Query: 237 ccactttagaaaaggcacctgggagttagcaaaggctatgaggagcatgtggtgggacca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ccactttagaaaaggcacctgggagttagcaaaggctatgaggagcatgtggtgggacca 496
Query: 297 gtaatataaccagcactattttcctggagctagtgcatgtgaaaatttggttaaaggtat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtaatataaccagcactattttcctggagctagtgcatgtgaaaatttggttaaaggtat 556
Query: 357 agtataaagagtttcatttttttctttcaaggaaggtttatttaaaagcaccagttttag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agtataaagagtttcatttttttctttcaaggaaggtttatttaaaagcaccagttttag 616
Query: 417 tttttacttctaataaaagatgaaaggttatttactgtagtttcagatccatattgtata 476
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 617 tttttacttctaataaaagatgaaaggttatttactgtagtttccgatccatattgtata 676
Query: 477 gaactttgtcttgcttgaatggtaactcctaataggtttatttctctggtatactatgta 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaactttgtcttgcttgaatggtaactcctaataggtttatttctctggtatactatgta 736
Query: 537 ttaaatgcattgcacctgttaatacagactgcattg--tggtgtttgtgtagctggatgc 594
|||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 737 ttaaatgcattgcacctgttaatacagactgcattgcat------tgtgtagctggatgc 790
Query: 595 ttcaaacaagaaaccagtctgctttcttctagggtactagcctattagcaagttaattaa 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ttcaaacaagaaaccagtctgctttcttctagggtactagcctattagcaagttaattaa 850
Query: 655 acttaatt 662
||||||||
Sbjct: 851 acttaatt 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1058
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1048
Effective search space: 683296
Effective search space used: 683296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
