Query= MSMg01no299_c20.b1 MSMg01no299_c20.b1 CHROMAT_FILE:
MSMg01no299_c20.b1 PHD_FILE: MSMg01no299_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:01 2005
(468 letters)
>mm_chr16_92353263_92354125
Length = 863
Score = 629 bits (325), Expect = 0.0
Identities = 450/533 (84%), Gaps = 73/533 (13%)
Strand = Plus / Plus
Query: 4 gaattcaaaatttgattcca--ctaacaggatgcattgcaactgtagaggatgaagctga 61
||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||
Sbjct: 163 gaattcaaaatttgaa--cagactaacaggatgcactgcaactgtagaggatgaagctga 220
Query: 62 gttgaagaacatgggtcattgtcaaagggtttttttt---gtctttttg------gtttt 112
||||||||||||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 221 gttgaagaacatgggtcattgtcaaagggtttttttttttgt-tttttgttttttgtttt 279
Query: 113 t-----------------tgtttttttt------------cactccttgctgcttcttgg 143
| |||||||||| ||||||||||||||||||||
Sbjct: 280 tgtttttgtttttgtttttgtttttttttttttttttttgcactccttgctgcttcttgg 339
Query: 144 ctgcaggctgaggtgagccggtcagttttaactgtgcaatgctctgcctctgcctcgcca 203
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 340 ctgcaggctgaggtgagcctgtcagttttaactg--caatgctctgcctctgcctcgcca 397
Query: 204 tgactcaagcaatggcgggcgccaagtaacagttgatcaaaacctctgcagtgtgagcca 263
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 398 tgactcaagcaatggcgggcgccaagtaacagttgatcaaaacctccgcagtgtgagcca 457
Query: 264 aggtaaatctttccagatttgtctctcaggcatttgtttcacaatagaaaa-tggcttat 322
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 458 aggtaaatctttccagagttgtctctcaggcatttgtttcacaatagaaaaatggcttac 517
Query: 323 gccaggaggtcactgggtcttccgaggtcgttgggttttccttcccacatggcctccacg 382
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 518 gccaggaggtcactgggtcttccgaggtcgttggtttttccttcccacatggcctccacg 577
Query: 383 actcagagt-----ggtt----------------------gacacggtagctcccttcag 415
||||||||| |||| |||||||| |||||||||||
Sbjct: 578 actcagagtctttaggtttaggtctcatctcgccatggtcgacacggtggctcccttcag 637
Query: 416 gcgttctggagagagctgtcatggtgactgaaaaatgaagctcattgctctga 468
|||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 638 gcgttctggagagagctgtcttggtgactgagaaatgaagctcattgctctga 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 863
Length adjustment: 10
Effective length of query: 458
Effective length of database: 853
Effective search space: 390674
Effective search space used: 390674
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_c20.g1 MSMg01no299_c20.g1 CHROMAT_FILE:
MSMg01no299_c20.g1 PHD_FILE: MSMg01no299_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:01 2005
(247 letters)
>mm_chr16_92537690_92538336
Length = 647
Score = 400 bits (207), Expect = e-116
Identities = 237/247 (95%)
Strand = Plus / Minus
Query: 1 ttatttctttggtggatgcttacctgactcacttgtgatctttttgaaaaatattaacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttatttctttggtggatgcttacctgactcacttgtgatctttttgaaaaatattaacct 275
Query: 61 ggagttttatgcacgctaagcaactgctcccctgtggacccccttccccagctgagccca 120
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 274 ggagttttatgcacgctaagcaattgctcccctgtggaccccctcccccagctgagccca 215
Query: 121 gctctctttctcctttttatttaggcatgggggtcttattatcttgcctagctgggtctt 180
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 214 gctctctctctcctttttatttaggcatgggggtcttattatcttgcctaggtgggcctt 155
Query: 181 gaactcgctctgtaacccacgcagggatgagcttgcagtccacctccgtcagcttcgtgg 240
||||||||||| |||||||| |||| |||||||| |||||||||||||||||| ||||||
Sbjct: 154 gaactcgctctttaacccactcaggaatgagctttcagtccacctccgtcagcctcgtgg 95
Query: 241 gtggcag 247
|||||||
Sbjct: 94 gtggcag 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
