BAC Information

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BAC

Clone NameMSMg01-299K04
Chromosome16 (Build37)
Map Location 64,612,390 - 64,612,640
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha3, LOC100043540, Ckt2
Downstream gene4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931, Pou1f1, Chmp2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299K04.T7 (MSMg01no299_k04.b1)MSMg01-299K04.TJ (MSMg01no299_k04.g1)
ACCAG426352AG426353
length776772
length of high quality
(start - end)
283 (81 - 363)251 (74 - 324)
definitionCHROMAT_FILE: MSMg01no299_k04.b1 PHD_FILE: MSMg01no299_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:37 2005CHROMAT_FILE: MSMg01no299_k04.g1 PHD_FILE: MSMg01no299_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGATCCGCGGAA
TTCAAATGGAAATTGACTCCACAAAAAACCGAGGTAAATCTAGAAATCAA
ATACTTGGGAATTTAAACAAGAATCTCAGAGGCATTCCTCACCAATAGAT
TGCAAGAGAATCCTGGCAACAGAAGACAACTTAGAAGAAAGAGAAATATC
CATCAAAGAAAATAGATCAAAGAAAAATTATAAAATGTAAATAACTCCAG
GCAAAAAAATATCTAGAAAATACTACAGGACACTGTAAGATGGCCAGATT
TATGAATAATGATAGAGGAAGGAAAAGAAACCCAAGTCAAAGGAATAGAA
AATATTTTCCACAAAACCATAAAAGAAAAATGTTTCTAACTATAGAAGAA
GGCGCTTATCTGAGTACAAGAACCACTACCAAACACCAAACAGATTAAAC
CAGAAGATGGATTCTCCTCCGCACATAATAATGAAAATATCACATTTACC
GAACACAAAAGAATATAAAAAGCTAAAAAAGGAAAATGCTAAACCAAACC
AATTATACCGAGAATTATTACACTAACACTTGACTTCTAAATGAAGACTC
TAAAAGCTTAAGGCTTACATAGATTCCTGCAAAGTCCCAGAGACCCCCTA
TCCGCCCCAAGACTACTATGACCAGCCCAATTTTCCATAACAGTGACCAA
ATAACGCCCCGCATCCCTGCGCAGGAGAGGCCCCTTGCCCCCTGAAGGCC
CACCAAAATGCCCCCCCGTAGCGGCA
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGCCCAGGTTCTCTGAAAGATCAACAAGA
GCAGTAAGTGCGCTTAACTGTTGAACTGTCTCTCCAGCCCCTAAGTAGTA
ATTTTTTAATGTTTCTTATGTTTTATATTTGCTAGTATTCCAGTAACAAT
ATTAATTTTCTATTACATTTGACCTAAAAATCAGCCTATTAAATAAGGTG
ATGCCAGGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTAAGGGGGCAG
AGTCAGGCAGATATCTGAGTTCAATTTTAGCCTGGTCTTCAGAGTGAGTT
CCAGGACATTCAGGGCTATACAGAAAAACCCTGTCTCGGAAAAAAAGGTG
TTAAAGAAAACTATTACCCATGGTTTATTTCTAGTTCTGGATTATGTAAT
CATTACGCCTAAAGATTTTCTTTTACCACGTATAAAGATGTACTGGGAGA
CATACCTATTAATTAGCTACACCGAGCTAAAAGTTGCCTTAGAAAAATAT
GTTTAAATCTACTTCTATTCCTAACATATTTTAATTTATTATTTGAAAGT
TTCATAAACCCACACCCACCGAGACCCCTGTGCGTGTGCGCCTGTGTGTG
CATGTGTGTATAATGTACTTGGATCCCCTCCACCCCCTTTTCCGTCCTGA
ATTCCCCCCAACCCCCCTACAGCTTCCCAACCCATGATCCCCCTTACCTT
TTATTTTACTAAACCTCCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_k04.g1 MSMg01no299_k04.g1 CHROMAT_FILE:
MSMg01no299_k04.g1 PHD_FILE: MSMg01no299_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:37 2005
         (251 letters)



>mm_chr16_64612194_64612844
          Length = 651

 Score =  447 bits (231), Expect = e-130
 Identities = 246/251 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccaggttctctgaaagatcaacaagagcagtaagtgcgcttaactgttgaactgtctct 60
           ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 447 cccaggtcctctgaaagatcaacaagagcagtacgtgcgcttaactgttgaactgtctct 388

                                                                       
Query: 61  ccagcccctaagtagtaattttttaatgtttcttatgttttatatttgctagtattccag 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 387 ccagcccctaagtagtaatttttaaatgtttcttatgttttatatttgctagtattctag 328

                                                                       
Query: 121 taacaatattaattttctattacatttgacctaaaaatcagcctattaaataaggtgatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 taacaatattaattttctattacatttgacctaaaaatcagcctattaaataaggtgatg 268

                                                                       
Query: 181 ccaggcagtggtggtgcacgcctttaatcccagcactaagggggcagagtcaggcagata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 267 ccaggcagtggtggtgcacgcctttaatcccagcactaagggggcagaggcaggcagata 208

                      
Query: 241 tctgagttcaa 251
           |||||||||||
Sbjct: 207 tctgagttcaa 197


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)