Query= MSMg01no300_a08.b1 MSMg01no300_a08.b1 CHROMAT_FILE:
MSMg01no300_a08.b1 PHD_FILE: MSMg01no300_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:06 2005
(313 letters)
>mm_chr16_24205642_24206354
Length = 713
Score = 574 bits (297), Expect = e-168
Identities = 306/309 (99%)
Strand = Plus / Plus
Query: 5 gaattctctttgaagatgagaggctggtgagggagaaaagaatttgccactcaagtgagt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctttgaagatgagaggctggtgagggagaaaagaatttgccactcaagtgagt 264
Query: 65 caactggaacagacggtgtgtcctggctccctgggcctggtgctctctggctgcccaacc 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caactggaacagaaggtgtgtcctggctccctgggcctggtgctctctggctgcccaacc 324
Query: 125 agacagctggggtcacctcccctggggccacagggttccacttgggaacatcaggtcttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agacagctggggtcacctcccctggggccacagggttccacttgggaacatcaggtcttt 384
Query: 185 tttcagtgagtctctctaagccacagagcttctggtgcactcctgtcctctgcagtttta 244
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 tttcagtgagtctctctaagccacagagcttctggtgcactcctggcctctgcagtttta 444
Query: 245 ccaacataattgatcccagagctctgctcctacatacccattggcttccaagggagtgat 304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 ccaacataattgatcccagagctctgctcctacatacccattggcttcaaagggagtgat 504
Query: 305 ggcacaggg 313
|||||||||
Sbjct: 505 ggcacaggg 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no300_a08.g1 MSMg01no300_a08.g1 CHROMAT_FILE:
MSMg01no300_a08.g1 PHD_FILE: MSMg01no300_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:06 2005
(286 letters)
>mm_chr16_24361204_24361889
Length = 686
Score = 449 bits (232), Expect = e-130
Identities = 277/310 (89%), Gaps = 28/310 (9%)
Strand = Plus / Minus
Query: 1 acacctgggggtgccagggcagcattgatggcctgagttcaatccccaagcctcaagatg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 648 acacctgggggtgccagggcagcattgatggcctgagttcaatccctaagcctcaagatg 589
Query: 61 tagaagagagataactgcaagttatcttctggcctccacttgcatgcacatgtgcacag- 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tagaagagagataactgcaagttatcttctggcctccacttgcatgcacatgtgcacaga 529
Query: 120 ---------------------------acacacacacgcacacgcacacgcacatatgta 152
|||||||||| |||||||||||||||| |||||
Sbjct: 528 cacacacacacacacacacacacacacacacacacacacacacgcacacgcacacatgta 469
Query: 153 tgtacacatgcccacacacatatattctttgaatatcatacatgtacatatgtgttttga 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgtacacatgcccacacacatatattctttgaatatcatacatgtacatatgtgttttga 409
Query: 213 tcagggattccaagcttgttccatgtgttagtaatttgacgtatgcctgtgggcaggtag 272
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 408 tcagggattccaagcttgttccatgtgttaggaacttgacgtatgcctgtgggcaggtag 349
Query: 273 ctcactctga 282
||||||||||
Sbjct: 348 ctcactctga 339
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
