BAC Information

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BAC

Clone NameMSMg01-300E22
Chromosome16 (Build37)
Map Location 46,430,834 - 46,431,110
singlet/doubletsinglet
Overlap genePvrl3
Upstream geneGm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110
Downstream geneLOC628757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300E22.T7 (MSMg01no300_e22.b1)MSMg01-300E22.TJ (MSMg01no300_e22.g1)
ACCAG426831AG426832
length736741
length of high quality
(start - end)
283 (445 - 727)277 (81 - 357)
definitionCHROMAT_FILE: MSMg01no300_e22.b1 PHD_FILE: MSMg01no300_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:25 2005CHROMAT_FILE: MSMg01no300_e22.g1 PHD_FILE: MSMg01no300_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATGAAGAATGAAGCAAATCTCCTTTGACTAAATGGGATTACAGTAAGT
GCACTGAGAATTTATAGCACGAGATACTTGGAGAAAACTGTGTTCTAAGA
TTTATTTTAATTGTATCATTCAACATTAAAATATAGCCATTCATTTCTCT
TTTCTCATTCCAGGCTCTAGCCCCTATTATGTATCCACTCCTGATCTAGC
TGAGATCTATTTTTTATGGATTACTTTTATTCTTTGACAATTTCATGAGT
ATACTTACTGTATTTTGATTACTCTTTCCCCCAACACTCTTATCTCCCGC
TCATCCGCTTGACTCCTAANTCCCGNNACAACCCTAACACTCTTTCACTT
CCTTTCTCAGATTCATGAATTNAATGGAAAACTTCATTCCGCACCTGAAA
GTCTCGTTATCACCAACAGTTTGGGGTCTCCAATACAAATTAAGTTTCAT
CTTCAAAGCTTTATACAGTGGTCTTACAAGGCCAACTTTCAGGGACTCTG
ACTCTGCCACATATTTTCTGGTCTTACCTGCTCTCCACAACCCCTTCAAT
TTTACATCTTCGATGACTTTAAAGTCAGTAGCATATGGATACCATCCCTA
AGTTCATCCATCAACAAGAGATATAGCCTATTTCCTTGGAGCACAGCTAT
CTCGATTTCTCTGTGCTGACCCAGATGTAAGACTTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGACCAAGAAACCCTGCCTCA
AAGACTAAGGGAGAGTCATCCCTCAGTGGTGGCGGATCCTCACATTAACC
TTGGGCCTCTACTGCATATGCACCTACACACGAACATGCACGCTCGCACA
CACACAAAAGCAATGAAAGGAAATATCCAGGTCAAAAATAAAAGCAAAAA
GACAAACTCAGAAAGGAAACTAGATGTTCCCACTAGCTACCATTTATAAT
ATGCTATATAGTTGAAGAGCATGGAAGAAAATCAGCTTCACACAGACACG
TTGGGAATTGGGTGCCTATCCNAACAGTCCCTTTAGTATAAATGGAACAC
TTGTGCAGTACAGCACCCAAGAAAAAAAAAAAAAGCTGTTTTTTAAGGTC
ACTTGCTATACAGGATCTGAGACTCATCAATAAGCTCCACATTGCTTCCT
CAAAGTGCAGAATGTTTATACATATGCACCTAACATCCCCCACACCCTTC
AATTACAGAACCTGTTCTGTGTATTCTTACACTAGAGGTATTACTCATAA
ATTATTGTCAATAATTTAAATTCAATTAATTTTAATGCTAAAAGTTTTAC
ATTTACTAATGTTATCTGCCAGACAAAAAGTTTACATATATATGAACAAG
ATCAACTATAAAAAAACTCTAGGAGGTTTTACTGTGGGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_e22.g1 MSMg01no300_e22.g1 CHROMAT_FILE:
MSMg01no300_e22.g1 PHD_FILE: MSMg01no300_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:25 2005
         (277 letters)



>mm_chr16_46430634_46431310
          Length = 677

 Score =  520 bits (269), Expect = e-152
 Identities = 275/277 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaccaagaaaccctgcctcaaagactaagggagagtcatccctcagtggtggcggatcct 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 gaccaagaaaccctgcctcaaagactaagggagagtcatccatcagtggtggcggatcct 260

                                                                       
Query: 61  cacattaaccttgggcctctactgcatatgcacctacacacgaacatgcacgctcgcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacattaaccttgggcctctactgcatatgcacctacacacgaacatgcacgctcgcaca 320

                                                                       
Query: 121 cacacaaaagcaatgaaaggaaatatccaggtcaaaaataaaagcaaaaagacaaactca 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacaaaagcaacgaaaggaaatatccaggtcaaaaataaaagcaaaaagacaaactca 380

                                                                       
Query: 181 gaaaggaaactagatgttcccactagctaccatttataatatgctatatagttgaagagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaggaaactagatgttcccactagctaccatttataatatgctatatagttgaagagc 440

                                                
Query: 241 atggaagaaaatcagcttcacacagacacgttgggaa 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggaagaaaatcagcttcacacagacacgttgggaa 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)