BAC Information

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BAC

Clone NameMSMg01-300F17
Chromosome16 (Build37)
Map Location 46,269,434 - 46,458,544
singlet/doubletdoublet
Overlap genePvrl3
Upstream geneCd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110
Downstream geneLOC628757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300F17.T7 (MSMg01no300_f17.b1)MSMg01-300F17.TJ (MSMg01no300_f17.g1)
ACCAG426867AG426868
length741741
length of high quality
(start - end)
238 (126 - 363)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no300_f17.b1 PHD_FILE: MSMg01no300_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:29 2005CHROMAT_FILE: MSMg01no300_f17.g1 PHD_FILE: MSMg01no300_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,269,434 - 46,269,671)(46,458,257 - 46,458,544)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGCAGTTCCTTCTGACATGGGGAAACCATGGAGGGTATTTTCTA
GAAGAAATGTTAGAAATTATACCTCCATTTCTTCTCTAGAAGGCCAAGTA
GTCAAATCCATTCGTACAAAAGACTTGAACAATAGCTTATTGCTGGAATT
ATGACAGTATCTCTCACTTTTAGTGATTATCCAGTACTCAACAGATTTTA
CTCAATATAAACTCAAATGGGAAATCGGGGACTTTGTGATGTCAAGAACA
CCGACTGATTTATGTCCATTCCAAGAGAGGAGCATTCCACTCTGTAGATA
TGCTCAATCTTGTGTTTTACCATGCGCATATTACTAATGGCATCCTCACA
GCTCAGGAGAGATTTGGTACAATGATGAACAGATTCTTCAGACTCATTTC
CTCTTTTGCTTCACCGTATTGGCAGACAACATATTCCACCGTGTCTTGCA
ATTTGATGTAGTTTGATGAGATTTGCTCGATATAATGTAGATAATATGAT
ATACTTCCAGACAACATGAGACCTGATATATAAAGTCTACCAATGGATTT
AAGGCTTATGAAGTCATAGAATCACGAGAAAGAAGAAAGGCAGCTTCCTG
AGTGTCTGAGTAGACAAGATCTCTGCCCTACCCATGCTTCTAATTTGTAG
CGCGTTAGATACAGCTACTTTGCTGCTACTGGTTTGAACAG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATTCATGTGTTCATCAATGTATTCA
TTGTCTTAGTCAAGTACTGTTGCCTGAATATTGCCTTCCCGAGTGATTAT
GCTGAAAGTAAAGAAAATAATTACCATTCTTCTAAAGCTTATCTATTGAG
TTAATGTTTTCTCATCGTATAGTGTATTTATTCCAAAGGAGGATAATTGT
ATCTTGCATGCATTGATTTTATAGATGCTCCTGAAGTTTCAGTAACAGGA
TATGATGGAAATTGGTTCGTGGGAAGAAAAGGTGTTAACCTCAAGTGTAA
TGCTGATGCAAATTTTTCTCCCTTCACCCCCGCGTGGAGCAGGTAATACA
GAGTTAAACCCAGAGCACCCAACTGTTTAAAAGAGAAATGGATTCTTAAA
AGCAGTAAGGCTGATTTTACTCAGTGCATAATTAGATTCATGGCTAATGA
AATTAAACAAATGAGAAGTTTCTCAATATTTTTCTATCTTATTGTCTCTT
ACCATCCTGTCCTGGCATTTCTGTCCCAGGATACTGGCAGCAGTGTTAGA
GATTTTAGCTTGTTTTTCCTTTTCCCTATAATTACTGTCGCGTATCTGAT
GATTACTAGCTTGTGGTGAGGAAGCTTCCACTTCAGCTTCAGCTTGGTTT
CTTTCTCTGCATCCTCTATCTATGGTGTGCGCAATCTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_f17.b1 MSMg01no300_f17.b1 CHROMAT_FILE:
MSMg01no300_f17.b1 PHD_FILE: MSMg01no300_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:29 2005
         (238 letters)



>mm_chr16_46269234_46269871
          Length = 638

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttcttctctagaaggccaagtagtcaaatccattcgtacaaaagacttgaacaatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttcttctctagaaggccaagtagtcaaatccattcgtacaaaagacttgaacaatag 260

                                                                       
Query: 61  cttattgctggaattatgacagtatctctcacttttagtgattatccagtactcaacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttattgctggaattatgacagtatctctcacttttagtgattatccagtactcaacaga 320

                                                                       
Query: 121 ttttactcaatataaactcaaatgggaaatcggggactttgtgatgtcaagaacaccgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttactcaatataaactcaaatgggaaatcggggactttgtgatgtcaagaacaccgac 380

                                                                     
Query: 181 tgatttatgtccattccaagagaggagcattccactctgtagatatgctcaatcttgt 238
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tgatttatgtccattccaagagaggagcattccactctgtagctatgctcaatcttgt 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no300_f17.g1 MSMg01no300_f17.g1 CHROMAT_FILE:
MSMg01no300_f17.g1 PHD_FILE: MSMg01no300_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:29 2005
         (290 letters)



>mm_chr16_46458057_46458746
          Length = 690

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattcatgtgttcatcaatgtattcattgtcttagtcaagtactgttgcctgaatattgc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 488 cattcatgtgttcatcaatgtattcattgtcttagtcaagtactgttgactgaatattgc 429

                                                                       
Query: 61  cttcccgagtgattatgctgaaagtaaagaaaataattaccattcttctaaagcttatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cttcccgagtgattatgctgaaagtaaagaaaataattaccattcttctaaagcttatct 369

                                                                       
Query: 121 attgagttaatgttttctcatcgtatagtgtatttattccaaaggaggataattgtatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 attgagttaatgttttctcatcgtatagtgtatttattccaaaggaggataattgtatct 309

                                                                       
Query: 181 tgcatgcattgattttatagatgctcctgaagtttcagtaacaggatatgatggaaattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgcatgcattgattttatagatgctcctgaagtttcagtaacaggatatgatggaaattg 249

                                                           
Query: 241 gttcgtgggaagaaaaggtgttaacctcaagtgtaatgctgatgcaaa 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gttcgtgggaagaaaaggtgttaacctcaagtgtaatgctgatgcaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)