Query= MSMg01no300_k01.b1 MSMg01no300_k01.b1 CHROMAT_FILE:
MSMg01no300_k01.b1 PHD_FILE: MSMg01no300_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:49 2005
(690 letters)
>mm_chr16_42672848_42673937
Length = 1090
Score = 1239 bits (641), Expect = 0.0
Identities = 674/685 (98%)
Strand = Plus / Plus
Query: 6 aattcataaaattcttaggcaagtgggtggaactaaaaaatattatcctgagtaaggtaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattcataaaattcttaggcaagtgggtggaactaaaaaatattatcctgagtaaggtaa 265
Query: 66 cccaatcacaaaagaatacacatggtatgtactcactgataagtggatattaacccagaa 125
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctcaatcacaaaagaatacacatggtatgtactcactgataagtggatattaacccagaa 325
Query: 126 gctcagaatacccaagatacaattcacagaccacatgaagctcaagaagaaggaagagct 185
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 326 gctcagaatacccaagatataattcacagaccacatgaagctgaagaagaaggaagagct 385
Query: 186 aaatatggattgtttggtccttcttagaagggggaacaaaacactcatgggaggagatat 245
|| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 386 aagtatggattgtttggtccttcttagaagggggaacaaaatacccatgggaggagatac 445
Query: 246 agagacaaagtgtgaagcagagactgaaggaaaggccatccagagactgctccatccatg 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 446 agagacaaagtgtgaagcagagactgaaggaaaggccatccagagactgctccatctatg 505
Query: 306 gatccaccccacatacagtcacaacggcattttttaaattgagagaaaaggtacagggag 365
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 506 gatccaacccacatacagtcacaacagcattttttaaattgagagaaaaggtacagggag 565
Query: 366 agaaatgaaaagaccacaccccttctctaggatgtaatacattcagtttgaacttccccg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agaaatgaaaagaccacaccccttctctaggatgtaatacattcagtttgaacttccccg 625
Query: 426 tgttcatctataggaacaggttttccttgactgactcaaatggtaatggtgtgaatcaag 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tgttcatctataggaacaggttttccttgactgactcaaatggtaatggtgtgaatcaag 685
Query: 486 agagattatatataatctaagtactatgtatatgttacactatacataaaatagctacat 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agagattatatataatctaagtactatgtatatgttacactatacataaaatagctacat 745
Query: 546 tatgaaacaaatacatattctgagattttggtgatacccaagtgggtaccatagttggcg 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tatgaaacaaatacatattctgagattttggtgatacccaagtgggtaccatagttggcg 805
Query: 606 ttagtttgtctcactttgtagaatgaacaatagcactgggactggaagaaatgtttaagt 665
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 806 ttagtttgtctcactttgtagaatgaacaatagcactggaactggaagaaatgtttaagt 865
Query: 666 gaccaccaagtaatgtcctttgtgg 690
|||||||||||||||||||||||||
Sbjct: 866 gaccaccaagtaatgtcctttgtgg 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no300_k01.g1 MSMg01no300_k01.g1 CHROMAT_FILE:
MSMg01no300_k01.g1 PHD_FILE: MSMg01no300_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:49 2005
(664 letters)
>mm_chr16_42692568_42693629
Length = 1062
Score = 1110 bits (574), Expect = 0.0
Identities = 604/620 (97%), Gaps = 11/620 (1%)
Strand = Plus / Minus
Query: 1 actcctgaccccagcagcagtgtctgatgcatagagagtactctgaaagaatcactaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 actcctgaccccagcagcagtgtctgatgcatagagagtactctgaaagaatcactaata 559
Query: 61 agtgaaaggtaacagtcataagaaataaaacctttcccccaaaatatctataaggagagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agtgaaaggtaacagtcataagaaataaaacctttcccccaaaatatctataaggagagt 499
Query: 121 gattgtggttataagttgcatggtattttacagttcacaaaataggcttattccatttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gattgtggttataagttgcatggtattttacagttcacaaaataggcttattccatttaa 439
Query: 181 ttctcttaatgttatcctctcagggctgtcagaatcacttgcatttatagatgaggaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttctcttaatgttatcctctcagggctgtcagaatcacttgcatttatagatgaggaatt 379
Query: 241 caagtttagagtggcccagtgaaaatgaagattccaattctataatgaaaagttttaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 378 caagtttagagtggcccagtgaaaatgaagattccaattctataatgaaaaattttaagg 319
Query: 301 tcttttcataatactgacctttctcggtttgtgactttaccttaattgctgagttcaact 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 318 tcttttcataatactgacctttctcggtttgtgactttaccttaattgctgacttcagct 259
Query: 361 aaagggaactttttttttttaaaaataggattcatgtggctttgtttcaaaataaacatt 420
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 258 aaagggaactttttttttt--aaaataggattcacgtggctttgtttcaaaataaacatt 201
Query: 421 ---------gggccaaaaataataaattggtacagtactcttaataacctaaaagaaacg 471
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgaaatattgggccaaaaataataaattggtacagtactcttaataacctaaaagaaacg 141
Query: 472 tggtataagaaactatgtttgacttaaaactctttctatgaaccgacagacagcaataga 531
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tggtataagaaactacgtttgacttaaaactctttctatgaaccgacagacagcaataga 81
Query: 532 aatgttgattctaagagattctattgacaaagagtatggatctgatttttctctattatt 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 aatgttgattctaagagattctattgacaaagagtatggatctgatttttctctattatt 21
Query: 592 aaagatagattatttcctta 611
||||||||||||||||||||
Sbjct: 20 aaagatagattatttcctta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1062
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1052
Effective search space: 688008
Effective search space used: 688008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
