Query= MSMg01no300_k19.b1 MSMg01no300_k19.b1 CHROMAT_FILE:
MSMg01no300_k19.b1 PHD_FILE: MSMg01no300_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:53 2005
(678 letters)
>mm_chr16_58925958_58927035
Length = 1078
Score = 1280 bits (662), Expect = 0.0
Identities = 671/674 (99%)
Strand = Plus / Minus
Query: 5 gaattcatcctgattccgtgtagatttttaaaaaaaaattcccactagataaaagaaata 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 gaattcatcctgattctgtgtagatttttaaaaaaaaattcccactagataaaagaaata 819
Query: 65 gctcattttcaacattactttgatcccataatacaatacttaaaattatgttgtctggag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 gctcattttcaacattactttgatcccataatacaatacttaaaattatgttgtctggag 759
Query: 125 aatgttatgagaatctctcaagttgaaaaatgtaaaattacagaccatggctttgttctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 aatgttatgagaatctctcaagttgaaaaatgtaaaattacagaccatggctttgttctc 699
Query: 185 aagtacaggtgacctcgtgcagttaaggccttccactccagaagtttctcaaacatttca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aagtacaggtgacctcgtgcagttaaggccttccactccagaagtttctcaaacatttca 639
Query: 245 gggcagtcccttatgcacaacctacgagtaacttttcatgacccatgacctatcctgggc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gggcagtcccttatgcacaacctacgagtaacttttcatgacccatgacctatcctgggc 579
Query: 305 ttgctgctcttctggagacagggcaatatgaagttgttcttctgtacactgatcctgtaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ttgctgctcttctggagacagggcaatatgaagttgttcttctgtacactgatcctgtaa 519
Query: 365 tttgagctgggtagtgagatatattcttcttgtgactgtaattaaattcctttataattt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tttgagctgggtagtgagatatattcttcttgtgactgtaattaaattcctttataattt 459
Query: 425 tgtctcagcacagatcaagcatgatgaaggcaaatcactctttgacagtagagttcatcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tgtctcagcacagatcaagcatgatgaaggcaaatcactctttgacagtagagttcatcc 399
Query: 485 tcataggattctcagatcacacagatctgaagacacttctgttcctgctgttctctgcca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tcataggattctcagatcacacagatctgaagacacttctgttcctgctgttctctgcca 339
Query: 545 tctatctggtcaccatagtggggaatcttgggctggtggccttgatctatatggagcctc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tctatctggtcaccatagtggggaatcttgggctggtggccttgatctatatggagcctc 279
Query: 605 gtctccacacacccatgtacatctttctgggcaacctggctctgatggactcctgctgct 664
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 278 gtctccacacacccatgtacatctttctgggaaatctggctctgatggactcctgctgct 219
Query: 665 cctgtgccatcact 678
||||||||||||||
Sbjct: 218 cctgtgccatcact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no300_k19.g1 MSMg01no300_k19.g1 CHROMAT_FILE:
MSMg01no300_k19.g1 PHD_FILE: MSMg01no300_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:53 2005
(617 letters)
>mm_chr16_58794093_58795109
Length = 1017
Score = 447 bits (231), Expect = e-129
Identities = 538/677 (79%), Gaps = 83/677 (12%)
Strand = Plus / Plus
Query: 1 ttattgta-gttcttggcatctttatccaaaaa--taaattgctcactattgcctggatt 57
||||| || |||||||| | ||||||||| ||||||||||| || || ||| ||
Sbjct: 156 ttattttatgttcttggtacctttatcca----gttaaattgctcattagtgtatgggtt 211
Query: 58 tatttatggatactgttccatgcgtttggtatttttgtgactatttttatgccagcacat 117
|||||||| |||||||| |||| |||| |||||| || ||||||||||||||||| ||
Sbjct: 212 tatttatgtatactgttttatgcttttgatatttt-gtttctatttttatgccagcatat 270
Query: 118 tttattttgatcacagtagctttgttatagattatggaaacaagtaggacatgaattgct 177
| || |||||||| |||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 271 tctactttgatcattgtagctttattatagattatggaaataagtaggacatgcattgct 330
Query: 178 cagatagacattagaaaca--tcctaagttcatgtgtttgatttcaaatgaccaaggaaa 235
||||||||||| | || |||||| || |||||||| |||||||||| |||||||||
Sbjct: 331 cagatagacatgggg--caagtcctaaattgatgtgtttaatttcaaatggccaaggaaa 388
Query: 236 ttat-aaa-atatacgagtataataataatatactacattc-attttcatagagctttat 292
| | ||| |||| ||||||||| ||| |||||||||| |||| | ||||||||||
Sbjct: 389 tcctgaaacatat--gagtataattgtaacatactacattagatttcc-tagagctttag 445
Query: 293 agacaca-gatgactttt-tttaatgcatgagtttagggtattagaaatgttcttatttg 350
||||||| ||||| |||| ||| || ||||||||||| ||||||||||||| |||||
Sbjct: 446 agacacacgatga-ttttatttcattcatgagtttagtatattagaaatgtt---atttg 501
Query: 351 ttttcccactatattt----------cac------------------------------- 369
|||||||||||||||| |||
Sbjct: 502 ttttcccactatattttctcaacagacacaagatgataaatttttttcttttaaactgtg 561
Query: 370 ----ca-t---tggtggctgagtgtat--tgac-tgtaatactgtgacaactgtttctga 418
|| | ||||||||| | | || |||| | || |||||||||||||||||||||
Sbjct: 562 aactcagtctgtggtggctg-g-gcatagtgacattta-tactgtgacaactgtttctga 618
Query: 419 gcaattaactgtgatctcagagcatcaagagagcaggtggaaggaagaactttgtgttag 478
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 619 gcaattaactgtgatctcagagcatcaagagagcacatggaaggaagaactttgtattac 678
Query: 479 ctgatatgtgtcatttatgatacagtgctagtaacaaaaatagtggcagttgtt-ctgtt 537
|||||||||||||| |||||||||||| ||||||||||| |||||| |||| || |||||
Sbjct: 679 ctgatatgtgtcatctatgatacagtgttagtaacaaaattagtggaagtt-ttactgtt 737
Query: 538 aacaagattgactgatgcgtttaatcacttccacattccacagggcaggatctcaaccaa 597
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 738 agcaagattgactgatgtgtttaatcacttccacattccacagggcaggatctcaac-aa 796
Query: 598 a-gtatgttgtgataat 613
| || || |||||||||
Sbjct: 797 atgtgtgctgtgataat 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
