BAC Information

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BAC

Clone NameMSMg01-301E23
Chromosome16 (Build37)
Map Location 32,426,218 - 32,426,822
singlet/doubletsinglet
Overlap gene0610012D17Rik
Upstream geneBdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19
Downstream genePcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4, Zfp148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301E23.T7 (MSMg01no301_e23.b1)MSMg01-301E23.TJ (MSMg01no301_e23.g1)
ACCAG427548AG427549
length745750
length of high quality
(start - end)		291 (66 - 356)615 (64 - 678)
definitionCHROMAT_FILE: MSMg01no301_e23.b1 PHD_FILE: MSMg01no301_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:41 2005CHROMAT_FILE: MSMg01no301_e23.g1 PHD_FILE: MSMg01no301_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTT
TAGTTTCGAAACCACATTTTTAATGGGGTTAGTAAATTTTTTAAATCATT
TTTTATTATTATAAGTCCGTACACTGTTGCTGTCTTCAGAGGCACCAGCA
GAGGGCATCAGATCTCATTATGGGTGGTTGTGAGCCACCATGTAGTTGCT
GGGATTTGAACTCAGGATCTTCAGAACAGTAGTCAGTGCTCTTACTCACT
GAGCCATTTCACCAGCCCGTAATTGATATAAAATTGAAGTTAAAATCTCT
TACATTGGTACAGATTTTATATATTGATATAGAATCAAGGTTTTCATTGG
TATGAATCTATATATTGACCCCCCACCCCCCATTAATATTGTTACTCTTA
GATAGGCATTGTGCCTTTACAACTCATTTAAAAACAAGATGATTAGCTGG
GCATGGTGGCGCACGCCTTTACTCCCAGCACTTGAGGCAGAGGCAGGTGG
ATTTCCGAGTTCGGGGTCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC
CAGGGATACACAGAGAAACTGTCTCGAAAAATAAAAACAAACAAACAAAC
TAGCAAACAAATGATGACAGCGAATTTTATCTAATTGACGGATATAATGG
ACTAGATGTTAACTGTATATCTTACTTTGTAATTTACATGATTGTTAGGG
TTCTGTTCAATTTATGTCTGATAGAATCAGGTTTGTCTCTTTGTN

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTACTTGTAAAGCAATGTGTGCTGGACAACCAGGAAGT
ATGGGAGTCATAGGTGACTATTTGCAACTAGAGGTGAGGGCCCAGGGCCT
CTAGCCACCTCAGCACCCCAGCCAGCTGTCTGAAAACTACAGGACTCAAT
CTCTCGGAGTCTCTGGTTCTTAGAGTGGAACTCCACTGTACATTACTTCG
GCTAGGACACTTGTATGTATCTTCTAGAGGGCTTAGTTCTTGAAGAATAA
TAGGAAAAGAGGTCTTACAAAGGACCCAACAGAATACTTCATCCAACGTA
GTAATTTGTAGAAACATATACAAGAAAGGTGCATCTGTGAGCTAGAATTC
AGTCCTCTAACTGGACTTTCATTAGGAGGCTCAGAGCAGTAAAATAAAAT
GTTTTTGAGGCTGGGGAAGATGGCTACTGGGAAGACCTGGGCTATAGAGA
GGCCCTGTTCCAGAAACAAGCAAAAGCCAGTTAAAGTCCTGAAAGCCTGT
AATCCCCGCACCTGGGAATGGGAGGCAGGAGATCTAGGGTTCCGGGACAT
CCTCAGCCACATAAATGTACTTGAGGCCAGCCTAGGCTACAATGAGACCC
TGTCTCAGGAAAAAAAAAAAAGTAGAATTTCAAAATATCTTTAGAGGCAT
AACGTTTCTGTGCACAGTATAAAGATTATTCTTGTATCATTCAAATGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_e23.g1 MSMg01no301_e23.g1 CHROMAT_FILE:
MSMg01no301_e23.g1 PHD_FILE: MSMg01no301_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:41 2005
         (615 letters)



>mm_chr16_32426168_32427179
          Length = 1012

 Score = 1091 bits (564), Expect = 0.0
 Identities = 596/608 (98%), Gaps = 3/608 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacttgtaaagcaatgtgtgctggacaaccaggaagtatgggagtcataggtgactattt 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 655 tacttgtaaagcaatgtgtgctggacaaccaggaagtgtgggagtcataggtgactattt 596

                                                                       
Query: 61  gcaactagaggtgagggcccagggcctctagccacctcagcaccccagccagctgtctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gcaactagaggtgagggcccagggcctctagccacctcagcaccccagccagctgtctga 536

                                                                       
Query: 121 aaactacaggactcaatctctcggagtctctggttcttagagtggaactccactgtacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aaactacaggactcaatctctcggagtctctggttcttagagtggaactccactgtacat 476

                                                                       
Query: 181 tacttcggctaggacacttgtatgtatcttctagagggcttagttcttgaagaataatag 240
           |||||  ||||||||||||||||||||||||  |||||||||||||||   |||||||||
Sbjct: 475 tactttagctaggacacttgtatgtatcttccggagggcttagttctt---gaataatag 419

                                                                       
Query: 241 gaaaagaggtcttacaaaggacccaacagaatacttcatccaacgtagtaatttgtagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gaaaagaggtcttacaaaggacccaacagaatacttcatccaacgtagtaatttgtagaa 359

                                                                       
Query: 301 acatatacaagaaaggtgcatctgtgagctagaattcagtcctctaactggactttcatt 360
           | |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||
Sbjct: 358 atatatacaagaaaggtgcaactgttagctagaattcagtcatctaactggactttcatt 299

                                                                       
Query: 361 aggaggctcagagcagtaaaataaaatgtttttgaggctggggaagatggctactgggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aggaggctcagagcagtaaaataaaatgtttttgaggctggggaagatggctactgggaa 239

                                                                       
Query: 421 gacctgggctatagagaggccctgttccagaaacaagcaaaagccagttaaagtcctgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gacctgggctatagagaggccctgttccagaaacaagcaaaagccagttaaagtcctgaa 179

                                                                       
Query: 481 agcctgtaatccccgcacctgggaatgggaggcaggagatctagggttccgggacatcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 agcctgtaatccccgcacctgggaatgggaggcaggagatctagggttccgggacatcct 119

                                                                       
Query: 541 cagccacataaatgtacttgaggccagcctaggctacaatgagaccctgtctcaggaaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 cagccacataaatgtacttgaggccagcctaggctacaatgagaccctgtctcaggaaaa 59

                   
Query: 601 aaaaaaaa 608
           ||||||||
Sbjct: 58  aaaaaaaa 51


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1012
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1002
Effective search space:   606210
Effective search space used:   606210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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