BAC Information

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BAC

Clone NameMSMg01-301H21
Chromosome16 (Build37)
Map Location 18,872,086 - 18,940,036
singlet/doubletdoublet
Overlap geneMrpl40, Hira
Upstream geneDgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik
Downstream geneIgl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301H21.T7 (MSMg01no301_h21.b1)MSMg01-301H21.TJ (MSMg01no301_h21.g1)
ACCAG427676AG427677
length741738
length of high quality
(start - end)		319 (48 - 366)639 (76 - 714)
definitionCHROMAT_FILE: MSMg01no301_h21.b1 PHD_FILE: MSMg01no301_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:54 2005CHROMAT_FILE: MSMg01no301_h21.g1 PHD_FILE: MSMg01no301_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(18,939,722 - 18,940,036)(18,872,086 - 18,872,724)
sequence
ACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATCCCCTGACACTCACAGGATACAAAGAGAACCTATCCCTGA
ACTTTACATGCATAAGGAAGCAGACACATGTCCATACTAAGTCATACTAC
ACTAGATAAATAAATCACTACGATTAACTACCCTGAGACTCGACATCACC
CTAGTCAGATATCAGGAAAACAAATAATAAGATAAAATGGTGAGAATATG
AAAAAAAGTAACCTTTTTCTCTGTTTGTGTGAGTGTAAACTGGTACAGCC
ACTATGAAAATCAGTAAACTACCACATAATTCAGATATACTACTCTTGGG
CACAGACCGAAAGGACCATTTGAAGGCTCACACATCCATGTTTACTTATG
CTCTGTGATAAAAAGAGATCAACCTAGATATTCAAGGACAGATGAATCCT
GCTTCATATACACAATGGCATTTTACCCAACTGTAAAGAAAAATGAAATT
ACGAAATTTACAAGAAAATGGAACTAGAAAATAGTATATATTAAATGACA
CAAGGTAGGCTCACAGTAACCACTTCTCTCTCAAATGCAGATCCTAGGTT
TTAATTTTTACATATCTGTATTTATGCGAGAATGAGTGTGGAGTCTAAGA
CAGAAGACCATGGAAGGAGAAATAAAGGTATAAAGGTAGGAGGAGGGAAG
TACAATCCATGTGACAGGAATGTAGAAGAGGGATACTAGGA

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATATTGATTAAAATAAACGACAGAT
ATTTTTGATTACCCTTTATTTGTTGATTACAATAAATGACAGCCGGGCAT
GGTGGCGAATGCCTTTATTCCCAGCACTTGGGAGGCAGAGGCAGGTGAAT
TTCCGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCA
GGGCTACACAGAGAAACCCTGACTTGAAAAAAACAAAACAAAAGACAGAT
ACTTTTGATTACCCTTTATTTGTTCCTAGGATGACTCACTTGTCTGTGGA
AAGTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCA
GGACAGCAGTTTTCAGTCTCTTATCTTTTGAATTCTACTTGTGTGTACAC
CTTGGTGATATCATTGTACCTGCCTTCAGGGGCCTGGTAGTTAGAGATAG
GTGGTGTGTAATGTGGCCCTTCTTTCTCGAAGGGGAATAGGCTGGTATCC
CGCTTTATGGCCTCGGCATAGAGCTCTGCAGATTCAAGTTTCAGCTCCTC
CAGGGCTTCCTGCTGGGCTTCTAGCATGGATCTGATGGCGTCCCTCTCCA
TCTCATGCTCCTGCTGCTTAAACAGTGCCCACCTCTTCAGCAGAAGAGCT
CTCCGTTCACTCTCCTCAGGTGAATGCTCCTCCTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_h21.b1 MSMg01no301_h21.b1 CHROMAT_FILE:
MSMg01no301_h21.b1 PHD_FILE: MSMg01no301_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:54 2005
         (319 letters)



>mm_chr16_18939713_18940431
          Length = 719

 Score =  578 bits (299), Expect = e-169
 Identities = 311/315 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatcccctgacactcacaggatacaaagagaacctatccctgaactttacatgc 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 gaattcaatcccctgacactcacaggatacaaagagaacctattcctgaactttacatgc 265

                                                                       
Query: 65  ataaggaagcagacacatgtccatactaagtcatactacactagataaataaatcactac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ataaggaagcagacacatgtccatactaagtcatactacactagataaataaatcactac 205

                                                                       
Query: 125 gattaactaccctgagactcgacatcaccctagtcagatatcaggaaaacaaataataag 184
            || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aataaactaccctgagactcgacatcaccctagtcagatatcaggaaaacaaataataag 145

                                                                       
Query: 185 ataaaatggtgagaatatgaaaaaaagtaacctttttctctgtttgtgtgagtgtaaact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ataaaatggtgagaatatgaaaaaaagtaacctttttctctgtttgtgtgagtgtaaact 85

                                                                       
Query: 245 ggtacagccactatgaaaatcagtaaactaccacataattcagatatactactcttgggc 304
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 84  ggtacagccactatgaaaatcagtaaactaccacataactcagatatactactcttgggc 25

                          
Query: 305 acagaccgaaaggac 319
           |||||||||||||||
Sbjct: 24  acagaccgaaaggac 10


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no301_h21.g1 MSMg01no301_h21.g1 CHROMAT_FILE:
MSMg01no301_h21.g1 PHD_FILE: MSMg01no301_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:54 2005
         (639 letters)



>mm_chr16_18871886_18872924
          Length = 1039

 Score = 1212 bits (627), Expect = 0.0
 Identities = 636/639 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattgattaaaataaacgacagatatttttgattaccctttatttgttgattacaataa 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 atattgattaaaataaacgacagatacttttgattaccctttatttgttgattacaataa 260

                                                                       
Query: 61  atgacagccgggcatggtggcgaatgcctttattcccagcacttgggaggcagaggcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgacagccgggcatggtggcgaatgcctttattcccagcacttgggaggcagaggcagg 320

                                                                       
Query: 121 tgaatttccgagttcgaggccagcctggtctacagagtgagttccaggacagccagggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tgaatttccgagttcgaggccagcctggtctacagagtgagttccaggacagccaggact 380

                                                                       
Query: 181 acacagagaaaccctgacttgaaaaaaacaaaacaaaagacagatacttttgattaccct 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 acacagagaaaccctgacttgaaaaaaacaaaacaaaagacagatactcttgattaccct 440

                                                                       
Query: 241 ttatttgttcctaggatgactcacttgtctgtggaaagtagactttagatctctactcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatttgttcctaggatgactcacttgtctgtggaaagtagactttagatctctactcca 500

                                                                       
Query: 301 gactcctagggccagcatgttcccaggacagcagttttcagtctcttatcttttgaattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gactcctagggccagcatgttcccaggacagcagttttcagtctcttatcttttgaattc 560

                                                                       
Query: 361 tacttgtgtgtacaccttggtgatatcattgtacctgccttcaggggcctggtagttaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacttgtgtgtacaccttggtgatatcattgtacctgccttcaggggcctggtagttaga 620

                                                                       
Query: 421 gataggtggtgtgtaatgtggcccttctttctcgaaggggaataggctggtatcccgctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gataggtggtgtgtaatgtggcccttctttctcgaaggggaataggctggtatcccgctt 680

                                                                       
Query: 481 tatggcctcggcatagagctctgcagattcaagtttcagctcctccagggcttcctgctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatggcctcggcatagagctctgcagattcaagtttcagctcctccagggcttcctgctg 740

                                                                       
Query: 541 ggcttctagcatggatctgatggcgtccctctccatctcatgctcctgctgcttaaacag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggcttctagcatggatctgatggcgtccctctccatctcatgctcctgctgcttaaacag 800

                                                  
Query: 601 tgcccacctcttcagcagaagagctctccgttcactctc 639
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgcccacctcttcagcagaagagctctccgttcactctc 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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