Query= MSMg01no301_i04.b1 MSMg01no301_i04.b1 CHROMAT_FILE:
MSMg01no301_i04.b1 PHD_FILE: MSMg01no301_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:55 2005
(678 letters)
>mm_chr16_27343302_27344379
Length = 1078
Score = 1220 bits (631), Expect = 0.0
Identities = 664/675 (98%)
Strand = Plus / Plus
Query: 4 ggaattctgtagctctgtacccaagagcaaaattgttctgagacaatttggatttggctg 63
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtagctctgtaaccaagagcaaaattgttctgagacaatttggatttggctg 263
Query: 64 tgtcaaaactcgtctgatagccctcaaaccaacctttaaaggccaatacagcccagccac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtcaaaactcgtctgatagccctcaaaccaacctttaaaggccaatacagcccagccac 323
Query: 124 agtcggtccagaaaaaaatctttatcaacatatcaacattactgttgagtctaaaacaat 183
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 324 agtcggtccagaaaaaaatctttatcaacatatcaacattactgtcgactctaaaacaat 383
Query: 184 accgtttataggaggcctttaatttctcactcttctctcttgggtttggtacaaatatgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 accgtttataggaggcctttaatttctcactcttctctcttgggtttggtacaaatatgg 443
Query: 244 ttggtatcaagagtcagtttcaaacactcagccaacttattctcccaagggatttctatc 303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 ttggtatcaagagtcagtttcaaacactcagtcaacttattctcccaagggatttctatc 503
Query: 304 tgtattctatttttgggtgaaggtgaacccatagtaacagaccttatatttggtctctag 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtattctatttttgggtgaaggtgaacccatagtaacagaccttatatttggtctctac 563
Query: 364 gttacctgatgctttccagtatcagtataataatgacctgaagtataaaattccatcact 423
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 564 attgcctgatgctttccagtatcagtataataatgacctgaagtataaaattccatcgct 623
Query: 424 ccactccaagacttggttttcagatctattttgatcatgcaaaactttgttaaagacatc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccactccaagacttggttttcagatctattttgatcatgcaaaactttgttaaagacatc 683
Query: 484 attggcagcctttcctaggtcacagtaagttggtgtattagacatatctacaacctgagg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 attggcagcctttcctaggtcacagtaagttggtgtattagacatatctacaacctgagg 743
Query: 544 gtgggcctgtcccacaccaccaaggatatttttctatgaaaatggcagattctttcacct 603
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtgggcccgtcccactccaccaaggatatttttctatgaaaatggcagattctttcacct 803
Query: 604 gcatctaatctaagccatgccatgccatcatcattttgtcacaagagggaatagacagaa 663
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 804 gcatctaatctaagccatgccacgccatcatcattttgtcacaagagggaatagacagaa 863
Query: 664 gtacagctctcctgt 678
|||||||||||||||
Sbjct: 864 gtacagctctcctgt 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_i04.g1 MSMg01no301_i04.g1 CHROMAT_FILE:
MSMg01no301_i04.g1 PHD_FILE: MSMg01no301_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:55 2005
(629 letters)
>mm_chr16_27521632_27522661
Length = 1030
Score = 1002 bits (518), Expect = 0.0
Identities = 539/546 (98%), Gaps = 1/546 (0%)
Strand = Plus / Minus
Query: 1 atgtaaggaacagaatatggctttgtatgtaccaagatctccagaaagcaactgatggtg 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 746 atgtaaggaacagaatatggctttgtatgtaccaagatctccaggaagcaactgatggtg 687
Query: 61 gaagtagcgaatccttaaattattaatgaggtaacttttgatctattccaaaggagtata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gaagtagcgaatccttaaattattaatgaggtaacttttgatctattccaaaggagtata 627
Query: 121 gagaagtaagttattcacttacactacaactgtgactgtgagacagagagaaggagagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gagaagtaagttattcacttacactacaactgtgactgtgagacagagagaaggagagaa 567
Query: 181 gaaagctttgtaggttataacagagggctggtgagtttctctccttccaggtgactcctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gaaagctttgtaggttataacagagggctggtgagtttctctccttccaggtgactcctc 507
Query: 241 acacctctaataacctcccccaccaatgaactagtttaacaaggtgaaggccagataagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acacctctaataacctcccccaccaatgaactagtttaacaaggtgaaggccagataagg 447
Query: 301 acatgttttcaaaacagttgtaggccaatcctgagtttgtttagggaagg-gacccttca 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 446 acatgttttcaaaacagttgtaggccaatcctgagtttgtttagggaaggagacccttca 387
Query: 360 aagggaaactaggctgcagatctcagcatctctcagcattgctgggggtctttttttata 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 386 aagggaaactaggctgcagatctcagcgtctctcagcattgctgggggtctttttctata 327
Query: 420 tgtctgctatgtgtttcctcactctaataaaaactttctttcctcaattgttgattctgt 479
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgtctgctgtgtgtttcctcactctaataaaaactttctttcctcaattgttgattctgt 267
Query: 480 ctactacgttcaagaataactctgctgctacctgtctgacttgatattttgtcctgcctt 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctactatgttcaagaataactctgctgctacctgtctgacttgatattttgtcctgcctt 207
Query: 540 tgaatt 545
| ||||
Sbjct: 206 ttaatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1030
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1020
Effective search space: 631380
Effective search space used: 631380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
