Query= MSMg01no301_p14.b1 MSMg01no301_p14.b1 CHROMAT_FILE:
MSMg01no301_p14.b1 PHD_FILE: MSMg01no301_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:30 2005
(542 letters)
>mm_chr16_74173101_74174041
Length = 941
Score = 915 bits (473), Expect = 0.0
Identities = 517/539 (95%), Gaps = 16/539 (2%)
Strand = Plus / Minus
Query: 5 gaattccaacaacctccc---gcttcacttaatcaaattttatagtgctggactaaagcc 61
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gaattccaacaa---cccagggcttcacttaatcaaattttatagtgctggactaaagcc 519
Query: 62 tgcaagcttgtgaagctcatttgtacattttgtaccatcttttagatgcttaatcaaata 121
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tgcaagcttatgaagctcatttgtacattttgtaccatcttttagatgcttaatcaaata 459
Query: 122 aagtaataaaatttagagctaaccttggctttgaatttatatcttcaagtcccctcaaat 181
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aaataataaaatttagagctaaccttggctttgaatttatatcttcaagtcccctcaaat 399
Query: 182 acattttatacaacaggattgatatcagttcgagattctgctcacctctagcaaatgtca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 acattttatacaacaggattgatatcagttcgagattctgctcacctctagcaaatgtca 339
Query: 242 tagacagatcatggatttatgtattcagagtttacagtcctttccttgccattcttctca 301
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 338 tagacagatcatggatttatgtattcagagtttacaatcctttccttgccattcttctca 279
Query: 302 taattgtctgcctgttttttaaagaatgtttagacagtatcttattcataaaataataag 361
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 taattgtctgcctg-tttttaaagaatgtttagacagtatcttattcataaaataataag 220
Query: 362 aaagataaaagtaaagtatgaagctcgggagatggctcagtagataaaaccactggcttt 421
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 aaagataaaagtaaaatatgaagctcgggagatggctcagtagataaaaccactggcttt 160
Query: 422 gcaagtatgggtctcttagtttagaccgctggcctcccaatgcaaacctaaatgtagact 481
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 159 gcaagtatgggtctcttagtttagaccgctggcctgccaatgcaaacctaaatgtagact 100
Query: 482 tgaacttgaacttgcctgtaactgtggtgctgtgcaggggggtgggggtggggggactg 540
|||| ||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 99 tgaa--------tgcctgtaactgtggtgctgtgcaggggggt-gcggtggggggactg 50
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 941
Length adjustment: 10
Effective length of query: 532
Effective length of database: 931
Effective search space: 495292
Effective search space used: 495292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_p14.g1 MSMg01no301_p14.g1 CHROMAT_FILE:
MSMg01no301_p14.g1 PHD_FILE: MSMg01no301_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:30 2005
(539 letters)
>mm_chr16_74006375_74007313
Length = 939
Score = 988 bits (511), Expect = 0.0
Identities = 532/539 (98%)
Strand = Plus / Plus
Query: 1 aagaggactcattctgaggcattggcgacattccaaatgactaagtgtaatatggtgaat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 aagaggactcattctgaggcattggcgacattccaaatgactaagtgtaatatggtaaat 260
Query: 61 ctttttctctagtgagaagtgtgcaattgatgaaattcaaaatactttctacaacccata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttttctctagtgagaagtgtgcaattgatgaaattcaaaatactttctacaacccata 320
Query: 121 tctaatcaaacttatatagaatctcaaaatgcagcaatgcatgcgtacaattccaattgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctaatcaaacttatatagaatctcaaaatgcagcaatgcatgcgtacaattccaattgt 380
Query: 181 gatttgcatggtgaaataatcttgttgtcactttaaaactcaactgtctctcctaagtca 240
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 381 gatttgcatggtgaaataatcttgttgtcactttaaaactcaattggctctcctaagtca 440
Query: 241 tctttggacagattctcacttgtaagttctcactgattccaaattgggcttccccgaaga 300
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct: 441 tctttggacagattctcactcgtaagttctcaatgattccaaattgggcttccctgaaga 500
Query: 301 acacaaagaagcttcatttggaataacagagtgattgttttctgaagtcttacgtgtgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acacaaagaagcttcatttggaataacagagtgattgttttctgaagtcttacgtgtgtc 560
Query: 361 tgaatttgaatttgattcttactttcccttaaaatcctttattagaagaatccaggcact 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaatttgaagttgattcttactttcccttaaaatcctttattagaagaatccaggcact 620
Query: 421 tttctctagactatgtgtttatttgaaaatatattcccctatttgtattagaattagaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttctctagactatgtgtttatttgaaaatatattcccctatttgtattagaattagaac 680
Query: 481 ataattttctcctctctgtatgatatttgttttagaatactctttatgcaatctctaag 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataattttctcctctctgtatgatatttgttttagaatactctttatgcaatctctaag 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
