BAC Information

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BAC

Clone NameMSMg01-302C04
Chromosome16 (Build37)
Map Location 64,766,838 - 64,925,969
singlet/doubletdoublet
Overlap gene4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f
Upstream geneEpha3, LOC100043540, Ckt2
Downstream geneLOC668247, LOC672931, Pou1f1, Chmp2b, EG383186, Vgll3, LOC664846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302C04.T7 (MSMg01no302_c04.b1)MSMg01-302C04.TJ (MSMg01no302_c04.g1)
ACCAG428124AG428125
length734744
length of high quality
(start - end)		239 (125 - 363)293 (74 - 366)
definitionCHROMAT_FILE: MSMg01no302_c04.b1 PHD_FILE: MSMg01no302_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:42 2005CHROMAT_FILE: MSMg01no302_c04.g1 PHD_FILE: MSMg01no302_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,766,838 - 64,767,076)(64,925,679 - 64,925,969)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCTCCTAAGCGACGAAATCAACCTTTTCAGCTTCTTTATCTTCCTT
TGCCTGCTGTGAAACTTGAAGACAGTGAAGTGAAGAGCCACCTCTCACAG
CCACAGTTCTACCTAAGCTGATTCCTAAGGGCCAAGGCAAGCCTTAGAGC
AAAGGCACCACACCCTGCCAGAGAACCTTCTTTTCAAAAAAGGAAGTAAA
CCTTTTAAATTTAAATTCTGGCCAAGTGAAATGTAACAAGAAGACCCCTG
CTGGATTCAGTGTCAACCAGCTAGGGTGTCAGCTACTCAGGAGGCAGAGG
TAAAGTTGGGTTGATTTCTAAGCACCCCCCAATCCATTCATTCTCCCCCC
CCCCCCCCAACTACCTCCCATTCACTTTTCTTTCCTGGGTTTGGTATCAA
ACCAAATAGGTCCTCTAGACCTTTGCAGGTTTTCCTTCTTCTAAGAAAGA
ACCTACTATGTATCCAAAACTAATCTGGGGCTTGCAATCACCACTTTTCT
TGTCCTCTGTATACTGAGGTTACAGGCATGTAACAGTCCACCTATTCTGA
TATCCTGTCTCTTTCAAACCCATTATGAAACAGTAATATAGGAATGTTAT
ATTTAATCCCCATGAACTTGGCCCTAGAAGAAGTTAGTTTACCAAAATAA
GAAATTATCCAAACTTCTTTTAAAAATCCATACG

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGCACCGTGAAAAGTCCCAGATCGG
AACTGAAGCATGAGAAATCTTGGAGAAGACAGAAAATCTCAGGCACCAGA
GAACGCAAAGCAGCCACTACCCTGGAATTGATCTTGGGTGCATTTGTAAT
ATGTTGGCTGCCCTTTTTTGTAAAAGAATTGGTTGTTAATGTCTGTGAAA
AATGTAAAATTTCTGAAGAAATGTCAAACTTTTTGGCATGGCTTGGTTAC
CTGAATTCCCTTATAAATCCACTGATTTATACCATCTTTAATGAAGACTT
CAAGAAAGCTTTCCTTTTTTTGTACCACGCCCATCTTAGGATAAAAGAAA
CCTAATTTTAAAGTGCGCACGCTTTATTTGTTGAATAGAGGGGCAGGGAT
AATTAAATGAATGTAAAGTAAGAAAACATTTAAATTTTTAGAGAAAATAT
ATTATAACTGCTAAAATTATAAGAGGATAAATTTATTTTTAATATCACCA
AGAAAATAAGATGTATTCATTTGGCCATAATTTTAATGTTCTTCAGATAA
TGACAAAATTTATGCTGCTCAGCTCGTAATATTTTGGCTATGCAATTTTC
CTAATAATTCTATCTACAAATACCTACATATCAAAATTTCGACAACATTT
GCTCTACCTTTTATTCAATCTCCCTGGCTTTTCCTACGTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_c04.b1 MSMg01no302_c04.b1 CHROMAT_FILE:
MSMg01no302_c04.b1 PHD_FILE: MSMg01no302_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:42 2005
         (239 letters)



>mm_chr16_64766638_64767276
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgaagtgaagagccacctctcacagccacagttctacctaagctgattcctaagggcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgaagtgaagagccacctctcacagccacagttctacctaagctgattcctaagggcca 260

                                                                       
Query: 61  aggcaagccttagagcaaaggcaccacaccctgccagagaaccttcttttcaaaaaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaagccttagagcaaaggcaccacaccctgccagagaaccttcttttcaaaaaagga 320

                                                                       
Query: 121 agtaaaccttttaaatttaaattctggccaagtgaaatgtaacaagaagacccctgctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaaaccttttaaatttaaattctggccaagtgaaatgtaacaagaagacccctgctgg 380

                                                                      
Query: 181 attcagtgtcaaccagctagggtgtcagctactcaggaggcagaggtaaagttgggttg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcagtgtcaaccagctagggtgtcagctactcaggaggcagaggtaaagttgggttg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no302_c04.g1 MSMg01no302_c04.g1 CHROMAT_FILE:
MSMg01no302_c04.g1 PHD_FILE: MSMg01no302_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:42 2005
         (293 letters)



>mm_chr16_64925479_64926171
          Length = 693

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcaccgtgaaaagtcccagatcggaactgaagcatgagaaatcttggagaagacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 acagcaccgtgaaaagtcccagatcggaactgaagcatgagaaatcttggagaagacaga 432

                                                                       
Query: 61  aaatctcaggcaccagagaacgcaaagcagccactaccctggaattgatcttgggtgcat 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 431 aaatctcaggcaccagagaacgcaaagcagccactaccctgggattgatcttgggtgcat 372

                                                                       
Query: 121 ttgtaatatgttggctgcccttttttgtaaaagaattggttgttaatgtctgtgaaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttgtaatatgttggctgcccttttttgtaaaagaattggttgttaatgtctgtgaaaaat 312

                                                                       
Query: 181 gtaaaatttctgaagaaatgtcaaactttttggcatggcttggttacctgaattccctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtaaaatttctgaagaaatgtcaaactttttggcatggcttggttacctgaattccctta 252

                                                              
Query: 241 taaatccactgatttataccatctttaatgaagacttcaagaaagctttcc 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 taaatccactgatttataccatctttaatgaagacttcaagaaagctttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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