BAC Information

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BAC

Clone NameMSMg01-302G08
Chromosome16 (Build37)
Map Location 52,927,009 - 53,087,024
singlet/doubletdoublet
Overlap geneLOC667895
Upstream geneCblb, Alcam, LOC100043430
Downstream geneLOC433027
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302G08.T7 (MSMg01no302_g08.b1)MSMg01-302G08.TJ (MSMg01no302_g08.g1)
ACCAG428297AG428298
length734744
length of high quality
(start - end)
194 (125 - 318)288 (72 - 359)
definitionCHROMAT_FILE: MSMg01no302_g08.b1 PHD_FILE: MSMg01no302_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:01 2005CHROMAT_FILE: MSMg01no302_g08.g1 PHD_FILE: MSMg01no302_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,086,831 - 53,087,024)(52,927,009 - 52,927,296)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGTAA
TTCTATAGGGTGACAAAAAACAGAGATAGGAGAATCCATGGACAGTCACA
ATCCTGACAGCCTGGTTCTTGCATTGATGGACTAGACATTTTGTCTCACA
AATTAGAAGGAGAAGAAAACAACTGAACTTATCTCTGCCCTTTCCACATG
CATGCATGGAACATATGTGAATATATTACAGGCACACACACAAACATGAA
CACATATGCGTTTTGCACATTGTATCTTGCCTGACCCACTTGGGATGACA
TAAACAACCACCAAAACCTTTTTTTATTGTGGATGCCAACAAAAGCTTGC
TGAGAGAATTCTTTTTATCTGCCTCCCGACAGGCTCTGACAGTGCCTGAC
AAATACAGAAGTGGATGCTCACAGAAATAAAATAGAATGGAGCATAGAGT
CCCCAATGAAGGACCTAGAGAAAGTACCTAAGGAGCTGAAGGGGTTTGTA
GCCCCATATGAGGAACAACAATATGAACTAAGCATTATCTTCAGAGCTCC
CTGGGACTAAACCACCAACAAAAGAAAGCACATGGTGGGACTCATGGCTC
TAGCTGATTATGGAGGAGAGTATGACCTAGTCAGTCATCAATAGAAGGAG
AAGCTTTGGTCCTGTGAAAGTTCTATGCCCCAGTATAGGGGAATGCCAGG
CCCAGGAAGCAGGAATGGTTGGATTAGTGAGCAG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTAATGAAAGTCTGGCAATAAATATGAG
AAATGGGCTCTAAGTGAAGTACCACTAAGAAGTAGACTGTCATGAAGCCA
TCCTAATCCAACAAAAGGTTAAGAAGATGATTAACTTGAATTGCCTTTGA
AAGTATTTCCTTAGAAGTGCTATCGAGCCGATAAGATGAGAAATGTTTGG
GAAATAAATACTGTTGTCTATCATGGTTGACATTTTATGGCATTTAAGAA
TTTGGAGGACACGTTTATAACTCTTATAAATTACTGTATGACATATATGA
GATATCAAATCTTAATCCTCCCCCCCCCCCCCCCTGATGCTAATACTTGG
AGGAAAATCTAAAGCACCATATGGCTTAAATAAATGCTCATGAGGGCGCT
GTTGTCATGAGTATTTAAGCATTGACTGTAAAATAATTAAAGATATATTA
TTCATCTCCCTTGATCCATTATTGGCAATAAGTATTATAGTAGCTTAAAC
TTTTTGAGTATTTACAATGTGCAAATACTATGCCAAGAATTTCATAAGCA
TATCTTATTTATTTATATTAATTAGCCTAGAATATATTCTCCTTTTGCAA
ATTGAACTAGAATTTATTAAAAGTTTACTCACCTAAGGTTCCCAGAGATG
TTTTCACAGCTTTTATATTCCAATGACAGTTATTTTTACATTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_g08.b1 MSMg01no302_g08.b1 CHROMAT_FILE:
MSMg01no302_g08.b1 PHD_FILE: MSMg01no302_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:01 2005
         (194 letters)



>mm_chr16_53086631_53087224
          Length = 594

 Score =  352 bits (182), Expect = e-102
 Identities = 191/194 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatggactagacattttgtctcacaaattagaaggagaagaaaacaactgaacttatct 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tgatgaactagacattttgtctcacaaattagaaggagaagaaaacaactgaacttatct 335

                                                                       
Query: 61  ctgccctttccacatgcatgcatggaacatatgtgaatatattacaggcacacacacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctgccctttccacatgcatgcatggaacatatgtgaatatattacaggcacacacacaaa 275

                                                                       
Query: 121 catgaacacatatgcgttttgcacattgtatcttgcctgacccacttgggatgacataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 274 catgaacacatatgcgttttgcacattgtatcttgcctgacccacctgggacgacataaa 215

                         
Query: 181 caaccaccaaaacc 194
           ||||||||||||||
Sbjct: 214 caaccaccaaaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no302_g08.g1 MSMg01no302_g08.g1 CHROMAT_FILE:
MSMg01no302_g08.g1 PHD_FILE: MSMg01no302_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:01 2005
         (288 letters)



>mm_chr16_52926809_52927496
          Length = 688

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaatgaaagtctggcaataaatatgagaaatgggctctaagtgaagtaccactaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaatgaaagtctggcaataaatatgagaaatgggctctaagtgaagtaccactaagaa 260

                                                                       
Query: 61  gtagactgtcatgaagccatcctaatccaacaaaaggttaagaagatgattaacttgaat 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagattgtcatgaagccatcctaatccaacaaaaggttaagaagatgattaacttgaat 320

                                                                       
Query: 121 tgcctttgaaagtatttccttagaagtgctatcgagccgataagatgagaaatgtttggg 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tgcctttgaaagtatttccttagaagtgctatcgagccaataagatgagaaatgtttggg 380

                                                                       
Query: 181 aaataaatactgttgtctatcatggttgacattttatggcatttaagaatttggaggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaataaatactgttgtctatcatggttgacattttatggcatttaagaatttggaggaca 440

                                                           
Query: 241 cgtttataactcttataaattactgtatgacatatatgagatatcaaa 288
           ||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtttataactcaaataaattactgtatgacatatatgagatatcaaa 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)