BAC Information

Click to search

BAC

Clone NameMSMg01-303A02
Chromosome16 (Build37)
Map Location 59,952,961 - 60,132,577
singlet/doubletdoublet
Overlap geneEpha6
Upstream geneOlfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6
Downstream geneLOC100043804, EG668168, LOC668170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303A02.T7 (MSMg01no303_a02.b1)MSMg01-303A02.TJ (MSMg01no303_a02.g1)
ACCAG428725AG428726
length718719
length of high quality
(start - end)		675 (44 - 718)645 (75 - 719)
definitionCHROMAT_FILE: MSMg01no303_a02.b1 PHD_FILE: MSMg01no303_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:47 2005CHROMAT_FILE: MSMg01no303_a02.g1 PHD_FILE: MSMg01no303_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,131,909 - 60,132,577)(59,952,961 - 59,953,605)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCAGTGTTTTATCCTTCAATTGTTTTAACCTAAAATGAAATAAATACA
TATAATTGTTCAGCTGTAAGAGCATTGATTTCTGTCTCCTCTGAGTCATC
AGAATCCTTTTACTTAATTCAAAACAATAACAAGTTACAATATGTATACA
GTTAACTTGAAAAGTAAGGGAGGACAAAGGAGGGGATTCCAAAACCAAAA
GAACAAAGAAAAGCCTGTGTGCCCCTTGTACTATGCTGTGGTTTGCTATA
TACAAAGCGACAAATGAAAGCCCTGACCTCAAAGATAAAAGCTACTAAAG
ATGACCTGTTTTGTAGTTTTCTGTCCCCACTCCAATCTTCCAAAGCTTCG
ATGATAAGAACTACTACAGAACCATACACCAGTTAGTTTGCTTTGCCTTT
GTTCATAACCCGACACATGGATATTGTTACAAACTCCATATTTACATCTA
ATTCCATGGAAAACATATTTTCTCTCTTCTCTAAACATGGTAATCATGAT
AATAAATAACATAATTTCTTCTGGAGAGTAAAGTCTTTTTGTTTTCCCCC
TTTTTACAATAGAGTTTTCAGCTGATAATTTTCAATTGATAGCAAATTAT
TTTAAATACTTAACTTTGTGGGCTTTAGTATGCATAAGTACTTTTTCTAT
AATTTATGGCACTATTAT

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATTGTTTGCTAAGCCTTTCATCTTC
CTGATAGGAAAGTCTTTTCAGATGAGAACATCACCGTGCAGTACAAGAGA
CACTTATGCTAGTTTTCAAAGGGAAACCTGGCCATGCAGGGGACCTGGTG
AGCCTCTGTGCCTGAGGAGTAGAGTGCAGTTAGGAAAACTTCTTTCCCAG
TAGCCTATGTTCTTGGGGTAATACTGGGGTAGTACGAGTATTCAATAACC
CTGGGAAACAAGATCACCCCTGGAATGTGCTGAGCCACAATATAGATAGA
GCCAGAGTTTAGAAGTTGGCAGTGGATTTCAAACATCATTGCCACCATCT
TAAAACTTGTAGTAGTTTTTAAACAAGGGACCTTCTTTCCCACTCTTATC
ATCAGACATTGCACCTGGCAAACTATAAAGCCTGCTACGTAGGAGAGCTT
TGAAAGGAGTGAGGTACGATCAGCTGCTTCCTTATGGTCTTTGAGAAGAC
ACAACTTGCCAGAATGATCATGCCTGGGTTTATTCTGTCTTCTCCAGAGG
ATTATACACATAGAACATCTTCAGGAGACTAATGACTACACAGAGGATGC
CTAAGATCTCTTATACCATTGGCTTTTAAGATGTCTTGTTATTCTTTATA
TTTCTCTGCATTCATAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_a02.b1 MSMg01no303_a02.b1 CHROMAT_FILE:
MSMg01no303_a02.b1 PHD_FILE: MSMg01no303_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:47 2005
         (675 letters)



>mm_chr16_60131703_60132777
          Length = 1075

 Score = 1278 bits (661), Expect = 0.0
 Identities = 667/669 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   aattcagtgttttatccttcaattgttttaacctaaaatgaaataaatacatataattgt 66
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 aattcagtgttttagctttcaattgttttaacctaaaatgaaataaatacatataattgt 816

                                                                       
Query: 67  tcagctgtaagagcattgatttctgtctcctctgagtcatcagaatccttttacttaatt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tcagctgtaagagcattgatttctgtctcctctgagtcatcagaatccttttacttaatt 756

                                                                       
Query: 127 caaaacaataacaagttacaatatgtatacagttaacttgaaaagtaagggaggacaaag 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 caaaacaataacaagttacaatatgtatacagttaacttgaaaagtaagggaggacaaag 696

                                                                       
Query: 187 gaggggattccaaaaccaaaagaacaaagaaaagcctgtgtgccccttgtactatgctgt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gaggggattccaaaaccaaaagaacaaagaaaagcctgtgtgccccttgtactatgctgt 636

                                                                       
Query: 247 ggtttgctatatacaaagcgacaaatgaaagccctgacctcaaagataaaagctactaaa 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ggtttgctatatacaaagcgacaaatgaaagccctgacctcaaagataaaagctactaaa 576

                                                                       
Query: 307 gatgacctgttttgtagttttctgtccccactccaatcttccaaagcttcgatgataaga 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gatgacctgttttgtagttttctgtccccactccaatcttccaaagcttcgatgataaga 516

                                                                       
Query: 367 actactacagaaccatacaccagttagtttgctttgcctttgttcataacccgacacatg 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 actactacagaaccatacaccagttagtttgctttgcctttgttcataacccgacacatg 456

                                                                       
Query: 427 gatattgttacaaactccatatttacatctaattccatggaaaacatattttctctcttc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gatattgttacaaactccatatttacatctaattccatggaaaacatattttctctcttc 396

                                                                       
Query: 487 tctaaacatggtaatcatgataataaataacataatttcttctggagagtaaagtctttt 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tctaaacatggtaatcatgataataaataacataatttcttctggagagtaaagtctttt 336

                                                                       
Query: 547 tgttttccccctttttacaatagagttttcagctgataattttcaattgatagcaaatta 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgttttccccctttttacaatagagttttcagctgataattttcaattgatagcaaatta 276

                                                                       
Query: 607 ttttaaatacttaactttgtgggctttagtatgcataagtactttttctataatttatgg 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttttaaatacttaactttgtgggctttagtatgcataagtactttttctataatttatgg 216

                    
Query: 667 cactattat 675
           |||||||||
Sbjct: 215 cactattat 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no303_a02.g1 MSMg01no303_a02.g1 CHROMAT_FILE:
MSMg01no303_a02.g1 PHD_FILE: MSMg01no303_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:47 2005
         (645 letters)



>mm_chr16_59952761_59953805
          Length = 1045

 Score = 1247 bits (645), Expect = 0.0
 Identities = 645/645 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattgtttgctaagcctttcatcttcctgataggaaagtcttttcagatgagaacatcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattgtttgctaagcctttcatcttcctgataggaaagtcttttcagatgagaacatcac 260

                                                                       
Query: 61  cgtgcagtacaagagacacttatgctagttttcaaagggaaacctggccatgcaggggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtgcagtacaagagacacttatgctagttttcaaagggaaacctggccatgcaggggac 320

                                                                       
Query: 121 ctggtgagcctctgtgcctgaggagtagagtgcagttaggaaaacttctttcccagtagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggtgagcctctgtgcctgaggagtagagtgcagttaggaaaacttctttcccagtagc 380

                                                                       
Query: 181 ctatgttcttggggtaatactggggtagtacgagtattcaataaccctgggaaacaagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatgttcttggggtaatactggggtagtacgagtattcaataaccctgggaaacaagat 440

                                                                       
Query: 241 cacccctggaatgtgctgagccacaatatagatagagccagagtttagaagttggcagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacccctggaatgtgctgagccacaatatagatagagccagagtttagaagttggcagtg 500

                                                                       
Query: 301 gatttcaaacatcattgccaccatcttaaaacttgtagtagtttttaaacaagggacctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatttcaaacatcattgccaccatcttaaaacttgtagtagtttttaaacaagggacctt 560

                                                                       
Query: 361 ctttcccactcttatcatcagacattgcacctggcaaactataaagcctgctacgtagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttcccactcttatcatcagacattgcacctggcaaactataaagcctgctacgtagga 620

                                                                       
Query: 421 gagctttgaaaggagtgaggtacgatcagctgcttccttatggtctttgagaagacacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagctttgaaaggagtgaggtacgatcagctgcttccttatggtctttgagaagacacaa 680

                                                                       
Query: 481 cttgccagaatgatcatgcctgggtttattctgtcttctccagaggattatacacataga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttgccagaatgatcatgcctgggtttattctgtcttctccagaggattatacacataga 740

                                                                       
Query: 541 acatcttcaggagactaatgactacacagaggatgcctaagatctcttataccattggct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acatcttcaggagactaatgactacacagaggatgcctaagatctcttataccattggct 800

                                                        
Query: 601 tttaagatgtcttgttattctttatatttctctgcattcatagga 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttaagatgtcttgttattctttatatttctctgcattcatagga 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |