BAC Information

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BAC

Clone NameMSMg01-303B13
Chromosome16 (Build37)
Map Location 83,334,820 - 83,392,372
singlet/doubletdoublet
Overlap geneEG545172
Upstream geneEG665260
Downstream geneLOC100039572, EG621729, LOC640489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303B13.T7 (MSMg01no303_b13.b1)MSMg01-303B13.TJ (MSMg01no303_b13.g1)
ACCAG428786AG428787
length748748
length of high quality
(start - end)
359 (40 - 398)625 (68 - 692)
definitionCHROMAT_FILE: MSMg01no303_b13.b1 PHD_FILE: MSMg01no303_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:54 2005CHROMAT_FILE: MSMg01no303_b13.g1 PHD_FILE: MSMg01no303_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,392,032 - 83,392,372)(83,334,820 - 83,335,441)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TCTGACATCTGTTGTCAGAGAAGTCACTGTTGTTTAACCACAGGAATACT
GCAGTGCAATAGCTGCAATGCCTGCTTAGGGAAGCTCTGTGAGAAGTAAT
CTCTTTCCTGTGATGAAATGAAAGAATAACTTTAAAGGGGATTCTATTAA
AATTATATAAATATTTTAGGCTTTTTTGGCTTTTGAGAAGTATTCTGTTT
TTAGCAATTCATGACACTTATATTTAATCTTCCTAAGTTCAAAAATGGCA
AATGAAAAACTAACTCAACGGCTAAATTCTGTATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATATAATCTCTA
AGATCATTATACCGAATAGTTGGGCCCTAGCCTGTGCTGCTCTTAGAAGG
GGTAGAATGTTTGGCAGGTGTAATCAGTTAGAAGGAGATATATATATATA
TATATATAACCAGGAAACCAGTAGTACAATTCTGAAACTTTGTGTAAGTC
AAATGGACCTTTATTTGTAAAGTTGTCAATGTTTAATATTTTGTCACAGT
AAAGGAAAGGTGATAACTATATATTCTTATGTTTTTAAGCATTTGCACCT
ATTAGAATTTGGTATATATCAAGCGCCAGACATACTTATAATCCACATAT
TGGAGATCAGAGGCCAAGGTATCAACTTGACTTTTATTTATGCAACAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACAGGAGAAAAGCTGAGGCTGAAAATACCACAG
ATTTTACACTTGTGGTTACAGAAAGAAGAAAATTAATCTATATAGTGTCA
CTGAATATAATTTATTTTGTAACACTGAAACTTAAAAAAAAAATCAAATC
AAAGTTTTGCATGAAGTGAATTCTCCTTAGATGATCAAATGTACAAACCA
TAGCTAGAATATAGAGTAAACAGTTAACAACAACAAGAACAAGCAAAAAT
AATGATGAATAAATGCAAGCATCTAGGAGAGAGCAGTGGTGATCAGAAAA
ACAGAAATATAAAATTGTCAGTAATGTGTGCCAAACAAACAAACAAACAC
ACAAACAAACAACAAATTAGTAGTTAAAGGCATCTGAACTTTTCTAGTTT
TCCTTATCACTCCTGCATGGAAACAAAGGAGCTGATTAAACAGTGGCTGG
ATTTTCAAAGCAATTTGGCATAAAGGTTGTGCTTGCTATTTGGAAGATGT
TACCAAAAAGAGCACCACTGTCAGTAATCAAAAATAAAAATAAAATAATT
AATAAATAATAAAAAAGAACGAAAAAAGAAAAGAGAGAAAGAAAGAAAGA
GAGAGAGAAAGAAAAAAAGAAAGAAAGAAAGAAAGAAAGACAGAAAGATA
GAAAGAAAGAAAGAAAGACAGAAAGACAGAAAGAGAAAGAAAGAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_b13.b1 MSMg01no303_b13.b1 CHROMAT_FILE:
MSMg01no303_b13.b1 PHD_FILE: MSMg01no303_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:54 2005
         (359 letters)



>mm_chr16_83391703_83392461
          Length = 759

 Score =  638 bits (330), Expect = 0.0
 Identities = 339/342 (99%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttctgacatctgttgtcagagaagtcactgttgtttaaccacaggaatactgca 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gaattcttctgacatttgttgtcagagaagtcactgttgtttaaccacaggaatactgca 611

                                                                       
Query: 65  gtgcaatagctgcaatgcctgcttagggaagctctgtgagaagtaatctctttcctgtga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gtgcaatagctgcaatgcctgcttagggaagctctgtgagaagtaatctctttcctgtga 551

                                                                       
Query: 125 tgaaatgaaagaataactttaaaggggattctattaaaattatataaatattttaggctt 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 550 tgaaatgaaagaataactttaaaggggattctattaaaattatataaatattttaggc-t 492

                                                                       
Query: 185 ttttggcttttgagaagtattctgtttttagcaattcatgacacttatatttaatcttcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttttggcttttgagaagtattctgtttttagcaattcatgacacttatatttaatcttcc 432

                                                                       
Query: 245 taagttcaaaaatggcaaatgaaaaactaactcaacggctaaattctgtatatatatata 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 431 taagttcaaaaatggcaaatgaaaaactaactcaatggctaaattctgtatatatatata 372

                                                     
Query: 305 tatatatatatatatatatatatatatatatatatatatata 346
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tatatatatatatatatatatatatatatatatatatatata 330



 Score =  105 bits (54), Expect = 6e-27
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                 
Query: 293 tatatatatatatatatatatatatatatatatatatatatatatatatatata 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatatatatatatatatatatatatatatatatatatatatatatatatatata 383



 Score =  105 bits (54), Expect = 6e-27
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                 
Query: 295 tatatatatatatatatatatatatatatatatatatatatatatatatatata 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatatatatatatatatatatatatatatatatatatatatatatatatatata 383



 Score =  105 bits (54), Expect = 6e-27
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                 
Query: 297 tatatatatatatatatatatatatatatatatatatatatatatatatatata 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatatatatatatatatatatatatatatatatatatatatatatatatatata 383



 Score =  105 bits (54), Expect = 6e-27
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                 
Query: 299 tatatatatatatatatatatatatatatatatatatatatatatatatatata 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatatatatatatatatatatatatatatatatatatatatatatatatatata 383



 Score =  105 bits (54), Expect = 6e-27
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                 
Query: 301 tatatatatatatatatatatatatatatatatatatatatatatatatatata 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatatatatatatatatatatatatatatatatatatatatatatatatatata 383



 Score = 54.9 bits (28), Expect = 8e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 294 atatatatatatatatatatatatatat 321
           ||||||||||||||||||||||||||||
Sbjct: 210 atatatatatatatatatatatatatat 237



 Score = 54.9 bits (28), Expect = 8e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 296 atatatatatatatatatatatatatat 323
           ||||||||||||||||||||||||||||
Sbjct: 210 atatatatatatatatatatatatatat 237



 Score = 54.9 bits (28), Expect = 8e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 298 atatatatatatatatatatatatatat 325
           ||||||||||||||||||||||||||||
Sbjct: 210 atatatatatatatatatatatatatat 237



 Score = 54.9 bits (28), Expect = 8e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 300 atatatatatatatatatatatatatat 327
           ||||||||||||||||||||||||||||
Sbjct: 210 atatatatatatatatatatatatatat 237



 Score = 54.9 bits (28), Expect = 8e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 302 atatatatatatatatatatatatatat 329
           ||||||||||||||||||||||||||||
Sbjct: 210 atatatatatatatatatatatatatat 237



 Score = 54.9 bits (28), Expect = 8e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 304 atatatatatatatatatatatatatat 331
           ||||||||||||||||||||||||||||
Sbjct: 210 atatatatatatatatatatatatatat 237



 Score = 54.9 bits (28), Expect = 8e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 306 atatatatatatatatatatatatatat 333
           ||||||||||||||||||||||||||||
Sbjct: 210 atatatatatatatatatatatatatat 237



 Score = 54.9 bits (28), Expect = 8e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 308 atatatatatatatatatatatatatat 335
           ||||||||||||||||||||||||||||
Sbjct: 210 atatatatatatatatatatatatatat 237



 Score = 54.9 bits (28), Expect = 8e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 310 atatatatatatatatatatatatatat 337
           ||||||||||||||||||||||||||||
Sbjct: 210 atatatatatatatatatatatatatat 237



 Score = 54.9 bits (28), Expect = 8e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 312 atatatatatatatatatatatatatat 339
           ||||||||||||||||||||||||||||
Sbjct: 210 atatatatatatatatatatatatatat 237



 Score = 54.9 bits (28), Expect = 8e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 314 atatatatatatatatatatatatatat 341
           ||||||||||||||||||||||||||||
Sbjct: 210 atatatatatatatatatatatatatat 237



 Score = 54.9 bits (28), Expect = 8e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 316 atatatatatatatatatatatatatat 343
           ||||||||||||||||||||||||||||
Sbjct: 210 atatatatatatatatatatatatatat 237



 Score = 54.9 bits (28), Expect = 8e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 318 atatatatatatatatatatatatatat 345
           ||||||||||||||||||||||||||||
Sbjct: 210 atatatatatatatatatatatatatat 237



 Score = 54.9 bits (28), Expect = 8e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 320 atatatatatatatatatatatatatat 347
           ||||||||||||||||||||||||||||
Sbjct: 210 atatatatatatatatatatatatatat 237



 Score = 54.9 bits (28), Expect = 8e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 322 atatatatatatatatatatatatatat 349
           ||||||||||||||||||||||||||||
Sbjct: 210 atatatatatatatatatatatatatat 237



 Score = 54.9 bits (28), Expect = 8e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 324 atatatatatatatatatatatatatat 351
           ||||||||||||||||||||||||||||
Sbjct: 210 atatatatatatatatatatatatatat 237



 Score = 54.9 bits (28), Expect = 8e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 326 atatatatatatatatatatatatatat 353
           ||||||||||||||||||||||||||||
Sbjct: 210 atatatatatatatatatatatatatat 237


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 181
Number of extensions: 97
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 31
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no303_b13.g1 MSMg01no303_b13.g1 CHROMAT_FILE:
MSMg01no303_b13.g1 PHD_FILE: MSMg01no303_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:54 2005
         (625 letters)



>mm_chr16_83334620_83335647
          Length = 1028

 Score =  980 bits (507), Expect = 0.0
 Identities = 592/639 (92%), Gaps = 33/639 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggagaaaagctgaggctgaaaataccacagattttacacttgtggttacagaaagaa 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 acaggagaaaagctgaggctgaaaattccacagattttacacttgtggttacagaaagaa 260

                                                                       
Query: 61  gaaaattaatctatatagtgtcactgaatataatttattttgtaacactgaaacttaaaa 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaatgaatctatatagtgtcactgaatataatttattttgtaacactgaaacttaaaa 320

                                                                       
Query: 121 aaa----aaatcaaatcaaagttttgcatgaagtgaattctccttagatgatcaaatgta 176
           |||    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 aaaagtcaaatc-aatcaaagttttgcatgaagtgaattctccttaaatgatcaaatgta 379

                                                                       
Query: 177 caaaccatagctagaatatagagtaaacagttaacaacaacaagaacaagcaaaaataat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caaaccatagctagaatatagagtaaacagttaacaacaacaagaacaagcaaaaataat 439

                                                                       
Query: 237 gatgaataaatgcaagcatctaggagagagcagtggtgatcagaaaaacagaaatataaa 296
           ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gatgagtaaatgtaagcatctaggagagagcagtggtgatcagaaaaacagaaatataaa 499

                                                                       
Query: 297 attgtcagtaatgtgtgccaaacaaacaaacaaacacacaaacaaacaacaaattagtag 356
           |||||||||||||||||||||                ||||||||||||||||||||| |
Sbjct: 500 attgtcagtaatgtgtgccaa----------------acaaacaaacaacaaattagtgg 543

                                                                       
Query: 357 ttaaaggcatctgaacttttctagttttccttatcactcctgcatggaaacaaaggagct 416
           |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct: 544 ttaaaggcatctgaacttgtctagttttccttatcactcctgcatggaagctaaggagct 603

                                                                       
Query: 417 gattaaacagtggctggattttcaaagcaatttggcataaaggttgtgcttgctatttgg 476
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 604 gattaaacaatggctggattttcaaagcaatttggcataaaggttgtgcttgctctttgg 663

                                                                       
Query: 477 aagatgttaccaaaaagagcaccactgtcagtaatcaaaaataaaaataaaataattaat 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aagatgttaccaaaaagagcaccactgtcagtaatcaaaaataaaaataaaataattaat 723

                                                                       
Query: 537 aaataataaaaaagaacgaaaaaagaaaagagagaaagaaagaaagagagagaga--aag 594
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 724 aaataataaaaaagaaagaaaaaagaaaagagagaaagaaagaaagagagagagagaaag 783

                                                  
Query: 595 aaa----------aaaagaaagaaagaaagaaagaaaga 623
           |||          |||||||||| ||| |||||||||||
Sbjct: 784 aaagagagagaataaaagaaagagagagagaaagaaaga 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1028
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1018
Effective search space:   626070
Effective search space used:   626070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)