BAC Information

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BAC

Clone NameMSMg01-303E03
Chromosome16 (Build37)
Map Location 23,413,314 - 23,413,690
singlet/doubletsinglet
Overlap genenone
Upstream geneEtv5, Dgkg, LOC671242, LOC666459, Crygs, Tbccd1, Dnajb11, Ahsg, Fetub, Hrg, Kng2, LOC624311, LOC666486, LOC666489, Kng1, LOC666493, Eif4a2, Rfc4, Adipoq, LOC100043541, EG625835, BC106179, St6gal1
Downstream geneRtp1, Masp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, Lpp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303E03.T7 (MSMg01no303_e03.b1)MSMg01-303E03.TJ (MSMg01no303_e03.g1)
ACCAG428901AG428902
length728707
length of high quality
(start - end)
317 (48 - 364)447 (77 - 523)
definitionCHROMAT_FILE: MSMg01no303_e03.b1 PHD_FILE: MSMg01no303_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:07 2005CHROMAT_FILE: MSMg01no303_e03.g1 PHD_FILE: MSMg01no303_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTGAATTGTTTCTTTCCCTGAACTTGTGAGATAGGATGTTAGT
AAATTAACTTTGGTAGCACAGCCATTTTGACCACATAAATTCTGCCACCC
CAGGAGCATGGAAGGTCTTTCCGTTGTCTAATATTTTCTTTGGTCTCCTT
TTTCAGTATCTCAGAGTTTTTGTTGTAGAGGTCTTTCACTTCTTTGTTGT
GATGTATCTCTAAAGCTTTATTGTTTGGGAGTGTGGGGGTGATGCAGTTT
CAAATATTTGTAACTAGCACGAAAAGAATTAGTGGGGGCTTAAATGTCAA
CCTTTGAATGCTTCTTATAATTTATGGCACGGCACTGCATGAGAATCACA
GGGGACTCAGGGACACACACATAGTATGTAGACATTAAATGGCACCGCAG
AACACTGTGAGGACTCAAATTAAACCACACCTCACCCATTACCATCTTTA
TTAAAAAAAGTGACTGACAAAGATAAAACAAGAATCAGAAAGCCATATGT
TTTATAAAATGAGGTATGATATGAAGGGAGGGGTGTCTTANCACGCTCTG
AGCTGAGGCACTTTCCTGAGGTACCAGATATAATACCGGTTTAGCACAAA
CCGAACTCTAATCGTTAACTGAAAAGGTCGCATGCCCATTTAGCCTTTAC
CAACCTCCGATTTTTTTGCAGATTTTTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGCAATTCTGTATCTAATTGCT
TTAGATCTAGGTCAATAAAGCATAAAGCAAGCCTGGAAAATATTACTGGA
CCAGCTATCAAAGATTCCTGGAGTCATGTTAAAATTTAAAAAGACAAGTG
AAATTCACTTGGAGAAGTTTAAACGGGTCATCTCTGAAACAATTGGATCA
TCAAAAAAACATGATGACATTTCTCCAAAGTCTGTTCCAGTAAATGGATG
GAACTAGAAAATAATAATAATAATAAGACTAAGTGAGGTAACCCATACCC
AGAAAGAGAAACTGCATGTTGTTTCTCATCTGTGGCTGCCAGTTCCAAAT
CTTCAGATATGAGCACAAATGCTGCAACTGCAGAAACCAGGGAAATAAAA
CGAGACCGTTGCGTGAATGGTGGGTGGCAGAGCAATAGAGAGGGACATAG
CACAGTTGGCTCTGTGTCTGTAGGCACCAACGTGAGAAAGGAAAGAGGGA
TGGTGAGGAAATTCTTCAGGGCTAACCCGGGAAAGCCACAGATCACCAAG
TGCAACGGCATTTCCAACGTTCAAGCCAGAATGGAACCCTCCTTCTCCTC
TTGGGTCCTCCTTAAAAAAACTTGGCTATGAGGAAACCCTGGGAAAATTA
CCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_e03.g1 MSMg01no303_e03.g1 CHROMAT_FILE:
MSMg01no303_e03.g1 PHD_FILE: MSMg01no303_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:07 2005
         (447 letters)



>mm_chr16_23413313_23414159
          Length = 847

 Score =  729 bits (377), Expect = 0.0
 Identities = 377/377 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgcaattctgtatctaattgctttagatctaggtcaataaagcataaagcaagcctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cctgcaattctgtatctaattgctttagatctaggtcaataaagcataaagcaagcctgg 319

                                                                       
Query: 61  aaaatattactggaccagctatcaaagattcctggagtcatgttaaaatttaaaaagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaaatattactggaccagctatcaaagattcctggagtcatgttaaaatttaaaaagaca 259

                                                                       
Query: 121 agtgaaattcacttggagaagtttaaacgggtcatctctgaaacaattggatcatcaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agtgaaattcacttggagaagtttaaacgggtcatctctgaaacaattggatcatcaaaa 199

                                                                       
Query: 181 aaacatgatgacatttctccaaagtctgttccagtaaatggatggaactagaaaataata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aaacatgatgacatttctccaaagtctgttccagtaaatggatggaactagaaaataata 139

                                                                       
Query: 241 ataataataagactaagtgaggtaacccatacccagaaagagaaactgcatgttgtttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ataataataagactaagtgaggtaacccatacccagaaagagaaactgcatgttgtttct 79

                                                                       
Query: 301 catctgtggctgccagttccaaatcttcagatatgagcacaaatgctgcaactgcagaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  catctgtggctgccagttccaaatcttcagatatgagcacaaatgctgcaactgcagaaa 19

                            
Query: 361 ccagggaaataaaacga 377
           |||||||||||||||||
Sbjct: 18  ccagggaaataaaacga 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)