Query= MSMg01no303_g21.b1 MSMg01no303_g21.b1 CHROMAT_FILE:
MSMg01no303_g21.b1 PHD_FILE: MSMg01no303_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:20 2005
(728 letters)
>mm_chr16_75233927_75235054
Length = 1128
Score = 1280 bits (662), Expect = 0.0
Identities = 710/726 (97%), Gaps = 2/726 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagtagctgtgtatttgtttatgtgttccagttatacccattgtttacatgatt 63
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 928 ggaattcagtagctgtgtatttatttatgtgttccagttatacccattgtttacatgatt 869
Query: 64 tcaatcacatggttttactctgaatataccatgcatatgctaatgaggcccacatttatc 123
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 tcaatcacatgattttactctgaatataccatgcatatgctaatgaggcccacatttatc 809
Query: 124 ttggtaggttttaagctctagttataatacatgcaaaaataaaaaagaattcatggattg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ttggtaggttttaagctctagttataatacatgcaaaaataaaaaagaattcatggattg 749
Query: 184 ttgtctcttcaaatcttagcttctggattttgtatagatcacaagtgttttactgatagc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ttgtctcttcaaatcttagcttctggattttgtatagatcacaagtgttttactgatagc 689
Query: 244 agcccttctgtgctttcctactgtttctatgtggtgttgtggcatcttatctcttccttt 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 688 agcccttctgtgctttcctactgtttctatgtggtattgtggcatcttatctcttccttt 629
Query: 304 tcaaagggtatctggctatagtaaatgatctccattcctccatccaaaatgcccattcac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tcaaagggtatctggctatagtaaatgatctccattcctccatccaaaatgcccattcac 569
Query: 364 ttttcaggaacacccaacccttttaaaacataaattagaacaatgtcagtgccagccaga 423
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 -tttcaggaagaggtaacccttttaaaacataaattagaacaatgtcagtgccagccaga 510
Query: 424 ataacaatgacgtgagattagcattctttcatgagctagctgtagtttgtcattgtaagt 483
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 509 ataacaatgacgtgagattagcattctttcatgagctagctgtagtttgccattgtaagt 450
Query: 484 ttacttcccatcctccttccccagaatccttcagtctcagacaaatatagttcatttttg 543
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 449 ttacttcccatcctccttccccagaatccttcaatctcagacaaatatagtacatttttg 390
Query: 544 cctcaaggccctgatggcagctgttgctattatggcaaaaataaatgtcctggttaaaat 603
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 389 cctcaaggccctgatggcagctgttgctattatggcaaaaataaatttcctggttaaaat 330
Query: 604 gaatatgtgggttataagtgttaagtaaaaactgttcctcattatggcaaaatcagcaaa 663
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 329 gaatatgtgggttataagtgttaagtaaaaaatgttcctcattatggcaaaatcagcaaa 270
Query: 664 gtgattttaataaatatgtgttttacttgttgcatt-aaaaaaaaagagtcaataggaag 722
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 269 gtgattttaataaatatgtgttttacttgttgcattaaaaaaaaaagagtcgataggaag 210
Query: 723 gtctgt 728
| ||||
Sbjct: 209 gcctgt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 728
Length of database: 1128
Length adjustment: 10
Effective length of query: 718
Effective length of database: 1118
Effective search space: 802724
Effective search space used: 802724
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no303_g21.g1 MSMg01no303_g21.g1 CHROMAT_FILE:
MSMg01no303_g21.g1 PHD_FILE: MSMg01no303_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:21 2005
(643 letters)
>mm_chr16_75073139_75074181
Length = 1043
Score = 1185 bits (613), Expect = 0.0
Identities = 634/643 (98%), Gaps = 4/643 (0%)
Strand = Plus / Plus
Query: 1 actctgtagaccagactggccttgaactcagaaatctacctgcctctgcctcccaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtagaccagactggccttgaactcagaaatctacctgcctctgcctcccaagtgc 260
Query: 61 tgggattaatggcgcgtgccaccactgcctgggaccactatgtatatattaaaaactcaa 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaatggcacgtgccaccactgcctgggaccactatgtatatattaaaaactcaa 320
Query: 121 atccaatctactatgtactaaaaagtaatcacttgaccttattttgtacattggccgatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atccaatctactatgtactaaaaagtaatcacttgaccttattttgtacattggccgatc 380
Query: 181 acattataatactatttcccctttataattttgttgttttttcccagtattctaataagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acattataatactatttcccctttataattttgttgttttttcccagtattctaataagt 440
Query: 241 aaaaaatggtgggtccaaataatagttctggagaattttaacaaaatgcaataattacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaaatggtgggtccaaataatagttctggagaattttaacaaaatgcaataattacaa 500
Query: 301 tacttaagtgttgcatatacaaaataaaattcctccaattatttacccaaaggaaatata 360
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 tacttaagtgttgcatatacaaaataaaattcctccaattatttaggcaaaggaaatata 560
Query: 361 attgctttactgataaattgtacataattttattttttcctagtgtgacttagtatgttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgctttactgataaattgtacataattttattttttcctagtgtgacttagtatgttt 620
Query: 421 tatgaatcttcaagtataaaatagtctaaaaatatttgcatattgtttcagtagagatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatgaatcttcaagtataaaatagtctaaaaatatttgcatattgtttcagtagagatat 680
Query: 481 atttaaaatttttttgaatatatatatagagaggtgaacatttttactagagaatccatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttaaaatttttttgaatatatatatagagaggtgaacatttttactagagaatccatt 740
Query: 541 ctaattctttttgaaattaaattattttatttatttacgatcctaatgttgtccactttc 600
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 741 ctaattctttttgaaattaaattattttattta----cgatcctaatgttgtccactttc 796
Query: 601 tggtcctccctctccaagtttttcaccctatcctcctccccct 643
|||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 797 tggtcctccctctccaagtttttcacccgatcttcctccccct 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
