BAC Information

Click to search

BAC

Clone NameMSMg01-303H17
Chromosome16 (Build37)
Map Location 88,855,192 - 88,907,475
singlet/doubletdoublet
Overlap geneKrtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2
Upstream geneGrik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15
Downstream geneLOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303H17.T7 (MSMg01no303_h17.b1)MSMg01-303H17.TJ (MSMg01no303_h17.g1)
ACCAG429064AG429065
length743742
length of high quality
(start - end)		692 (43 - 734)673 (70 - 742)
definitionCHROMAT_FILE: MSMg01no303_h17.b1 PHD_FILE: MSMg01no303_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:24 2005CHROMAT_FILE: MSMg01no303_h17.g1 PHD_FILE: MSMg01no303_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,855,192 - 88,855,879)(88,906,806 - 88,907,475)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAGCCACTTGCTTGCTCTAATAAGAGTTATATTCCTTAAATATGACT
GCACATATTTAGAGGGCATTCTTAATGGTGGTACTAGAAGTTTGACCACT
GCCTGAAAGACATCTTGGACAAAGGGTTTATTCATGTCATATATGCTACA
GAGGCAGGGAGTGAACATGATCTACTACCAAAACCAAGAGTGTCATGTGG
TGTGTGAATGACCTCTGTGGCTGCACTGTGTTGTTCTTTGGAGTAAATGG
GAGCACAAAGCATGTCCGCAGACACCGTTAACACTAATGACGTCTAAGTC
TTTGTTGGTGTTCCTAAGATCAAAGGTTTTATCAGGAGTTACAGAGAATA
TTTAGAAGTTCTTTGGAAGAAGTAAATCTTCTCAATCATTATTATCAAGA
GTCTATGGAAACACCATTTCTTAGTAAAAGCAATACCAACATGACTGTTG
ATTTAGAAGATGCAGTCGATACCTTGAGTCATTGTTCAAAGCAACTGTTT
ACTAAAACTAAAATAACTGGAGTCAAAACAAAGATAAACAGAGAAAAATA
GTGCTGTCATGAAAGGTAAAACCAGGTCAAGACCTAGCAAAGTTAGGAAG
TTATTTCAGGAACAGGACCCCATGGCAGATGACAGGTTCTTTAAGTCCGA
ANAACTATAACACAAAGGGGCCAAAAAGGCTGAGAGGTAACAN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATACAGAACACTGAATTCCCAATAGGAGAGT
CTAGCTTGCTCCAATCAGGTGAAAGATATAATTTTATGAAAAGTCATGGT
ATATTTGAAAAGTTATTAAATGAGGCAGCTACTTATTTCTTCTGATGGCT
CAGAAGAAACTAGAATAAAATCAGGATATTCATTATTAAAATATAGAAAT
AATAGAAACCCTGACATATTGAAATTAAATAATAAATTGTTTCATTTATA
AATGGGAAATTGAAAGTTACACTCATCATTTTATTGACCATTGTATTTCC
TGAGTAAGACAGACATAAATCCACTGGGCACATGAAGCAAATAGTATGGT
GTGCATCTCCAATTATATTATTTGTTGCAGTATATTCAGCATTTATGAAA
AAATACATAAAGCATTCCTAATGCAAGGAAAACATATCCTGGTGGAACAA
AAGAGTTACCTGAACCAAAATGAATTTTACTGTAAATAGAATTAATAAAT
AAGAAATGTAAAATATCTATTGTTATGTAGTAAAGATAGATTCCATATCA
GTAGAAATGACTGATCAAGGACGAGAGAGTGAACTATAACACAGAATAAT
GTTATAGAAAAAGAAAGCAAAGTACTTGAAGCATGCTGGAGAATCAGTAG
ATTTACTAAAACCCAGTCATTTCCATGAATTCGCTGAATAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_h17.b1 MSMg01no303_h17.b1 CHROMAT_FILE:
MSMg01no303_h17.b1 PHD_FILE: MSMg01no303_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:24 2005
         (692 letters)



>mm_chr16_88854988_88856079
          Length = 1092

 Score = 1234 bits (638), Expect = 0.0
 Identities = 676/689 (98%), Gaps = 2/689 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagccacttgcttgctctaataagagttatattccttaaatatgactgcacat 64
           ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagccacttgtttgctctaataggagttatattccttaaatatgactgcacat 264

                                                                       
Query: 65  atttagagggcattcttaatggtggtactagaagtttgaccactgcctgaaagacatctt 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttagagggcattctcaatggtggtactagaagtttgaccactgcctgaaagacatctt 324

                                                                       
Query: 125 ggacaaagggtttattcatgtcatatatgctacagaggcagggagtgaacatgatctact 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggacagagggtttattcatgtcatatatgctacagaggcagggagtgaacatgatctact 384

                                                                       
Query: 185 accaaaaccaagagtgtcatgtggtgtgtgaatgacctctgtggctgcactgtgttgttc 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 accaaaaccaagagtgtcatgtggtgtgtgaatgacccctgtggctgcactgtgttgttc 444

                                                                       
Query: 245 tttggagtaaatgggagcacaaagcatgtccgcagacaccgttaacactaatgacgtcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttggagtaaatgggagcacaaagcatgtccgcagacaccgttaacactaatgacgtcta 504

                                                                       
Query: 305 agtctt-tgttggtgttcctaagatcaaaggttttatcaggagttacagagaatatttag 363
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtcttct-ttggtgttcctaagatcaaaggttttatcaggagttacagagaatatttag 563

                                                                       
Query: 364 aagttctttggaagaagtaaatcttctcaatcattattatcaagagtctatggaaacacc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagttctttggaagaagtaaatcttctcaatcattattatcaagagtctatggaaacacc 623

                                                                       
Query: 424 atttcttagtaaaagcaataccaacatgactgttgatttagaagatgcagtcgatacctt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 624 atttcttagtaaaagcaataccaacatgactgttgatttagaagatgcaatcgatacctt 683

                                                                       
Query: 484 gagtcattgttcaaagcaactgtttactaaaactaaaataactggagtcaaaacaaagat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gagtcattgttcaaagcaactgtttactaaaactaaaataactggagtcaaaacaaagat 743

                                                                       
Query: 544 aaacagagaaaaatagtgctgtcatgaaaggtaaaaccaggtcaagacctagcaaagtta 603
           ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 744 aaacagagaaaaatagtgctgtcatgaaaggtaaaaccaagtcaagccctagcaaagtta 803

                                                                       
Query: 604 ggaagttatttcaggaacaggaccccatggcagatgacaggttctttaagtccgaanaac 663
           |||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 804 ggaagttatttcaggagcaggaccccatggcggatgacaggttctttaagtccgaaaaac 863

                                        
Query: 664 tataacacaaaggggccaaaaaggctgag 692
           |||||||||||||||||||||||||||||
Sbjct: 864 tataacacaaaggggccaaaaaggctgag 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no303_h17.g1 MSMg01no303_h17.g1 CHROMAT_FILE:
MSMg01no303_h17.g1 PHD_FILE: MSMg01no303_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:24 2005
         (673 letters)



>mm_chr16_88906604_88907676
          Length = 1073

 Score = 1265 bits (654), Expect = 0.0
 Identities = 666/670 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   acagaacactgaattcccaataggagagtctagcttgctccaatcaggtgaaagatataa 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 acagaacactgaattcccaataggagagtctagcttgctccaatcaggtgaaagatataa 813

                                                                       
Query: 63  ttttatgaaaagtcatggtatatttgaaaagttattaaatgaggcagctacttatttctt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 ttttatgaaaagtcatggtatatttgaaaagttattaaatgaggcagctacttatttctt 753

                                                                       
Query: 123 ctgatggctcagaagaaactagaataaaatcaggatattcattattaaaatatagaaata 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ctgatggctcagaagaaactagaataaaatcaggatattcattattaaaatatagaaata 693

                                                                       
Query: 183 atagaaaccctgacatattgaaattaaataataaattgtttcatttataaatgggaaatt 242
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gtagaaaccctgacatattgaaattaaataataaattgtttcatttataaatgggaaatt 633

                                                                       
Query: 243 gaaagttacactcatcattttattgaccattgtatttcctgagtaagacagacataaatc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gaaagttacactcatcattttattgaccattgtatttcctgagtaagacagacataaatc 573

                                                                       
Query: 303 cactgggcacatgaagcaaatagtatggtgtgcatctccaattatattatttgttgcagt 362
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cactgtgcacatgaagcaaatagtatggtgtgcatctccaattatattatttgttgcagt 513

                                                                       
Query: 363 atattcagcatttatgaaaaaatacataaagcattcctaatgcaaggaaaacatatcctg 422
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 512 atattcagcatttatgaaaaaatacataaagcattcctaatgcaaggaaagcatatcctg 453

                                                                       
Query: 423 gtggaacaaaagagttacctgaaccaaaatgaattttactgtaaatagaattaataaata 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gtggaacaaaagagttacctgaaccaaaatgaattttactgtaaatagaattaataaata 393

                                                                       
Query: 483 agaaatgtaaaatatctattgttatgtagtaaagatagattccatatcagtagaaatgac 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agaaatgtaaaatatctattgttatgtagtaaagatagattccatatcagtagaaatgac 333

                                                                       
Query: 543 tgatcaaggacgagagagtgaactataacacagaataatgttatagaaaaagaaagcaaa 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgatcaaggacgagagagtgaactataacacagaataatgttatagaaaaagaaagcaaa 273

                                                                       
Query: 603 gtacttgaagcatgctggagaatcagtagatttactaaaacccagtcatttccatgaatt 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 272 gtacttgaagcatgctggagaatcagtagatttactaaaacccagtcatttccataaatt 213

                     
Query: 663 cgctgaatag 672
           ||||||||||
Sbjct: 212 cgctgaatag 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |