BAC Information

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BAC

Clone NameMSMg01-304A10
Chromosome16 (Build37)
Map Location 25,857,743 - 25,858,525
singlet/doubletsinglet
Overlap geneTrp63
Upstream geneLpp, 5430420C16Rik
Downstream geneLOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057, Il1rap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304A10.T7 (MSMg01no304_a10.b1)MSMg01-304A10.TJ (MSMg01no304_a10.g1)
ACCAG429441AG429442
length1,3451,247
length of high quality
(start - end)		782 (93 - 874)104 (87 - 190)
definitionCHROMAT_FILE: MSMg01no304_a10.b1 PHD_FILE: MSMg01no304_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:07 2005CHROMAT_FILE: MSMg01no304_a10.g1 PHD_FILE: MSMg01no304_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCGGTTCNNNNNNNNCTCAGTGGGCGCTATAGACTCCTATGGGAGAG
GATCCGCGGAATTCCCGAATATGAAACTATCTTGTAAGGACCGCAAGCAG
ATGGTTGCTTGGAACTAGGGCCTGGAGGATAGGGTAGTCACAAAGGCAAA
GAGTCTTTGAGAAGTGATGGGAGCTCTTCTCTATATAGAATGTGACTCTG
ATTATTCAACTCTGTACTCTTCAAAAGTCACCAAGTTAAACAGTTTAAAA
CTGCTAGAGTTTACAGAAAATGATATATCAGTAAAGCTGATTGATGAAAA
AAATCTACGTGGAAAAAAATTTAAATGAATAAATTAGGCTTTGGAGTTCA
GAAACCTCAAGCCAGAGTTGAAGATCAAATTAGAGATTAATTTTGGAAAT
CCCAGGAACAAAGAATCATATTGAAAACACTGTATGTGTTCAAATTTCAG
TTTTTGCCAACATGAATCACCATGGTGTTTAAAAATATTGACGTAAATCC
ACATCCCATTTTTGCTATCTTGTATAAATGTGGAAAGCAGGGAAAGATGA
CAAGTCTATTTGCTAAGGGATAAAGGAGGAAGCTAAGCCTGAGGGATTAT
TAATCACGATAGGTTAGAGAGACTGAGTTTAGAACCAGAAAGTCATACGG
AAATCATGGTATCATCAGGACTCATTTGCTAGCAGTGAAGGAAACGGAGG
GATGGAGACTTGACTCTGCAAAGAAGGGTCTCTGCATTCCTACAGCTTCT
GTACTGTGGGTCTTGGGTTCAACCAGATGCAGTCAATATAATACAGCCAG
CCCTGGTCAGATGGTTTGATTTGGTCAAAGAGGAAACTCTGCAGCAGCAC
TGGAGAATATGGAAAGGTAGCATCCCAGATGTGGGGCTATCTGGAGATCT
CTAAATTGCTCCGGCAGAACGTAAAGAACAAATGGGAAAGCAGATTTTAT
CCGATGAGGAACAGCCCCCTTTGAATTTGAGGGCGGAACAGTGATGGGCT
TTAAAATTGGGTTGAAAAGTTGAAACACAACCTGGGAAGGGGGTTTAAGG
TTACTGTTTTAAAGAAATATTGTCTTTTCAAAACCTTTAATTGTGTTTTA
AACCCACTGGTTTTCAACATCTTGTTTCTCTATGAGCAATGAAATTTTTC
TATTTTTTTGTGGCACTAATCTTTCTCTATATACCTCTTACCTTTATAAA
ATTCAAGAATAAATTTTTGGGCATTGAATATAAGCTCCTATATTTAATAA
TTCTTNTAAAAAAAANATATACTTCTAGTAAATCCTATACTANCATAAGC
ACTAACTTCATATTCCTATATTNATATATTCTATAATATATATTT

NCCCATTTATNNNNNNATGAAGGNATGCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAGTTTATCTCTATACCCC
ATTTTTAAATTGAGTTTTCGATAAATTCTTGTTTGTTTGTTTGTTTGTTT
GTTTTGAGTCTACTTTCTTGAGTTCTTTATATATTTTGGTCTTTAGACCT
CTATTAGATGGTGGTTATTAAAGATNTTTTCNNAGTCTGTAGGTTGTTGT
TTTGTATTATTGANAGTGNNATTTGNNTTNNAGAAANTTTGNAAGAGGNT
ATATTTATNAATGGTTGATNTTAGAANNTGAGTTTTTGGTATTNTGTTNA
GGAAATTTTTTNNNATGANAATGTATTNAAGGNTGTTTTTNANTTTATNT
TATATTTTTTTTTTTATANNNGGNTNTANATTGAGATTTTTAATANATGG
GGAANNTGTTTTTTTTTTTCCCCCCCCAANANGGANGNNNNNGNAAAAAA
AAAAAAAGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNGNNNNN
NNNNNNNNNNNGNNNGGNNNNGNNNNNNNNGNNNNNNNNNNNGNGNNNNN
NGNNNNGGGGGGGGNNGNGGNGGGGNNNGNNNNGGGGNNNNNGGGGNNGN
GGGGGGGGGNNGGGGNNGNNGNNNGGGGNGGGGGNNGNGNNGGGGGGGGN
NNGGNGNGNGGGNGGGGGGGGGNNGGNNNGGNNGGGGGNGGGGGNNGGNN
NNGGGGGGGNGGNGGGGGGGNNGGGNGGGTGGNGGGGGGGGGGGNGGGNN
NNGGGGGGGGNGNGGGGGGGGGGNNNNGGGGGGGNGGNGGGGGGGGGGGN
GGGNGGGGNGGGGGGNGGGNNGGNGGGGGNNNGGGGGGGNGNGGGGGGGG
GGGGGGNGGGGGGGGNNGGGGGGGGNGGGGGNGGGNNNNGGGGGGGNGGG
GGNNGGNGGGGNNGGGGNNNGGGGGGGGGGGGGGGNGGGGGGGNGGGNNN
GGGGGNGGGGGGNGGNGGGGGGGGGGGGNGGNGGGNGGGGGGGGGGGGGG
GGGGGGGNNNNNGGGNGGNNGGGGGGGGGGGGGNNNNNNNGGGGNNNNGG
GGNGGGGNNNNGNGNGGGGNNGGGGGGNGGGGGGGGGNGGGNGGNNGGGG
GGNGGGNNGNNGGGNNGGGGGGNNGNNNNNGNNNNNGNNNGNNGNNNGGN
NNGGGGNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGNGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_a10.b1 MSMg01no304_a10.b1 CHROMAT_FILE:
MSMg01no304_a10.b1 PHD_FILE: MSMg01no304_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:07 2005
         (782 letters)



>mm_chr16_25857543_25858725
          Length = 1183

 Score = 1437 bits (743), Expect = 0.0
 Identities = 773/783 (98%), Gaps = 1/783 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaagcagatggttgcttggaactagggcctggaggatagggtagtcacaaaggcaaaga 60
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 201 gcaagcagatggttgcttggaactaggggttggaggatagggtagtcacaaaggcaaaga 260

                                                                       
Query: 61  gtctttgagaagtgatgggagctcttctctatatagaatgtgactctgattattcaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctttgagaagtgatgggagctcttctctatatagaatgtgactctgattattcaactc 320

                                                                       
Query: 121 tgtactcttcaaaagtcaccaagttaaacagtttaaaactgctagagtttacagaaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtactcttcaaaagtcaccaagttaaacagtttaaaactgctagagtttacagaaaatg 380

                                                                       
Query: 181 atatatcagtaaagctgattgatgaaaaaaatctacgtggaaaaaaa-tttaaatgaata 239
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 atatatcagtaaagctgattgatgaaaaaaatctacgtggaaaaaaaatttaaatgaata 440

                                                                       
Query: 240 aattaggctttggagttcagaaacctcaagccagagttgaagatcaaattagagattaat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattaggctttggagttcagaaacctcaagccagagttgaagatcaaattagagattaat 500

                                                                       
Query: 300 tttggaaatcccaggaacaaagaatcatattgaaaacactgtatgtgttcaaatttcagt 359
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 tttggaaatcccagaaacaaagaatcatattgaaaacactgtatgtgttcaaattttagt 560

                                                                       
Query: 360 ttttgccaacatgaatcaccatggtgtttaaaaatattgacgtaaatccacatcccattt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttgccaacatgaatcaccatggtgtttaaaaatattgacgtaaatccacatcccattt 620

                                                                       
Query: 420 ttgctatcttgtataaatgtggaaagcagggaaagatgacaagtctatttgctaagggat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgctatcttgtataaatgtggaaagcagggaaagatgacaagtctatttgctaagggat 680

                                                                       
Query: 480 aaaggaggaagctaagcctgagggattattaatcacgataggttagagagactgagttta 539
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaggaggaagctaagtctgagggattattaatcacgataggttagagagactgagttta 740

                                                                       
Query: 540 gaaccagaaagtcatacggaaatcatggtatcatcaggactcatttgctagcagtgaagg 599
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 gaaccagaaagtcatacggaaatcatggtgtcatcaggactcatttgctagcagtgaagg 800

                                                                       
Query: 600 aaacggagggatggagacttgactctgcaaagaagggtctctgcattcctacagcttctg 659
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaatggagggatggagacttgactctgcaaagaagggtctctgcattcctacagcttctg 860

                                                                       
Query: 660 tactgtgggtcttgggttcaaccagatgcagtcaatataatacagccagccctggtcaga 719
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 861 tactgtgggtcttgggttcaaccagatgcagtcaatataatacagctggccctggtcaga 920

                                                                       
Query: 720 tggtttgatttggtcaaagaggaaactctgcagcagcactggagaatatggaaaggtagc 779
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 tggtttgatttggtcaaagaggaaactctgcagcagcactggagaatatggaaaggtagc 980

              
Query: 780 atc 782
           |||
Sbjct: 981 atc 983


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 782
Length of database: 1183
Length adjustment: 10
Effective length of query: 772
Effective length of database: 1173
Effective search space:   905556
Effective search space used:   905556
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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