BAC Information

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BAC

Clone NameMSMg01-304B17
Chromosome16 (Build37)
Map Location 48,376,486 - 48,377,145
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628776, EG667741, EG639644, EG637273, Dppa4, Dppa2
Downstream geneEG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304B17.T7 (MSMg01no304_b17.b1)MSMg01-304B17.TJ (MSMg01no304_b17.g1)
ACCAG429498AG429499
length1,2981,335
length of high quality
(start - end)		661 (91 - 751)713 (92 - 804)
definitionCHROMAT_FILE: MSMg01no304_b17.b1 PHD_FILE: MSMg01no304_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:18 2005CHROMAT_FILE: MSMg01no304_b17.g1 PHD_FILE: MSMg01no304_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCGGTACNNNNNNNNCCAATGGGCGCTAAGACTCCTATGGGAGAGGA
TCCGCGGAATTCAGCAGTGGTTGAAAACCCTTGAAATACGACTTGAAGAA
AATCTGAAGAAGAGCTGCCCTGTAAAGGCGAATTGTGGAAAAAAACAATC
AAAGCAAACTGCACAGTGCTCTGAGACACCATGGTGAGAATCTGGACTTC
AAGGTCAGAAGATGCTTTCTAAGGCAGCTGAGTTACAGAGTGATGAAGGA
GAAAGATGTCGGCTCACCTCTCCATCTGACTGGCTTTCTTTTCCCTTGCT
TTGTCTGTATGAGCTTTAGAAGGACTTGAAATGACTGGTGGGAAGGCTGA
GCACTAGAAAGACCCAGGCAGCAGCAGTTTCTCCCTGGCAGAGTACTGCA
GCCTCATAGTTCCTCCTGGGCTGTATTCACAGAAACTAAAAGTCAGGTCA
ACCAGCCACAGACCCGTGGAAAGGACTGCTGTTGTGTGCAGCGCCACAAT
CCTGGAGTTTCATGCAGATATGGAAAGAGGCAGGAAATGAATCAGAAGAC
CTAAAGGTCAAGTGCATTAACCATGTGTTCTTCGTGGAGACAGACACTTG
GACTCTCAACCACGGTTATGGGCGCTGGTAGTAGAACTCACACTACACAT
CTAGAGGTCTTTGCAGATCTCTGAACAGAAGACTGATTGAAGGACTTCTG
GCTTCCTGCATCTCCACTCTAGCTATTCTAATGTCTTCTGCTCAGTGCTG
GGGATTCCAGAGCATTGCATCTCACAGGAATTCAACTCCCCCCCCTTTTT
AAAATTCTGCTGAATAGCTTGNATTAATTAGCTTTCCAACCAAATTTTCA
CACATATGTCTTTACCATTTCTAGGNATTACTGTGACTTCAAAAAAAAAA
TCCTATTTATTCCAAAGCAGNGACAGNTGGATTGAGAATTTTTATCCCCC
ACCCTTGTATGGAATTGTATGATACCACCCTTTTTAAAAACAAGGTGGTT
TTGGGAAAAAAAAATTTCCTTTCTCATCCAAAATTAAGGAAAAAAAAAAA
ACAAAAGTAAAAGTTTGTCTGTTTTCTTTCTCCTTTACACCTTGATATAA
TGAGAATTNTACATCATATCACAATCTTTTTTATNTTTCCCTTTAAGTAT
TATATTAATTAACACTTTTNCTATTAACTTAATNATATAACTAATCTACT
ACAAATATTCCATANNCCTCTTTTGTAATCCATTTCTGTATCTCCTCACT
TTTAATTAATATATTACTCTCTCTATCTTTTTACTTATAAATACTCTT

NNCCTTTGTGNNNNNNNTTGATGGTANCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTGGCCCACAGGGAGTGGC
ACTACTAGGAGGTGTGGCCTTCTTGGAATAGGTGTGCTCATGTTGGAAGA
AGTGTGTAACTGTGGAGGTGGGCTTTAAGGTCTCATATATGCTCGTCTAG
CCAGTGTGACAAAATTTTCTTCTGCTGCCTGTAGATCAAGATATAGAAAT
CTCAGTTCCTCTAGTACCATATCTACCTACTTGCCATAATGACAATGAGC
TAAACATCTGAAACTATAAGCCAGTCACAATTAAGTGTTTTATATTGTAA
GAGTTGTCATGGTCATGGTGTCTCATCACAGTAGTGAAACTCTAACTAAG
ACAGAAGTTGGAACTGGGGACTGGGATATTGCTGTGATAGGCCTAACCAT
GTTTTTGTTTGGAGGAATGAGGATTTGAAAATTCTGGATTAGAAAAGCAG
TGGAATGCTTTAGTCAGGGATCAGTGGAATGGTGCTGAAGGTGTTTTGAG
TTGTGGGGGCCTGGCTCAAGGGGTTTCAGGGGAGAAGAATGTTAATATAT
GATCTAGAGACTGTTATAATATTTTGACAAAGGAAATCTCAAAATACCCT
GTATAGAATAGACTCTGTCACGTGGTAATTAATGGCTTAATAAGCTGAAA
AAGGATAAATACAAAATGTATAGCTCAAGGATCAAAAGGGGACCAGGAAG
TGAAATGAAGCTATTGCCCATATTCAAGAAGATAAACAGATTAAAGATAT
TAAATAGAATTAGATCTCAGGGCAAATTTCCTACTTTTGAAAAGGAACTG
AAGAAAAGCTTAGATTCACGTGTGATGGTACATGTCTTTAATCTTACCAC
TCAGGAGGCAGAAACAGTAAAAATTCTGAATTTCAGGTAGTCTTCAGAAC
AACCCCCCCCCCTATTTTTTTTTTTAATTGGACCCAATTTAAGGGAGGGG
TGTCTTTAAATTCCTAATTCCAACGGCTCCCTTTTCTTGAGGGTTGGGAT
TTGTGGGAAAACTCTCTCTTATATTATAATAATAGAAGGGCTTCCCAAAG
ATTTCCTCCCTTCTTTTTTAGCCCCNNNGGNCNCGGCCNNNNNNCCCCCC
CCNCCCCCCCCCCCCCCNNCNCCNNCCCCCNNNNCCCCCNCNCCCCCNNN
CCNCCCCCCCCCNCCNCNCCCCCNCCCGCNNCCNCCCCCNNNNCCCCCCC
CCCCNNCGGCCCNNCNCCCCCCCCNCCNCNCNCCCCCCCGNCCCCCCCCC
CCCCCCCCCCCCNNNCCCCCCCCCCGCCCCCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_b17.b1 MSMg01no304_b17.b1 CHROMAT_FILE:
MSMg01no304_b17.b1 PHD_FILE: MSMg01no304_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:18 2005
         (661 letters)



>mm_chr16_48376286_48377345
          Length = 1060

 Score = 1232 bits (637), Expect = 0.0
 Identities = 655/661 (99%), Gaps = 1/661 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgaagaaaatctgaagaagagctgccctgtaaaggcgaattgtggaaaaaaacaatc 60
           ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 860 acttgaagaaaatctgaagaagagctg-cctggaaaggcgaattgtggaaaaaaacaatc 802

                                                                       
Query: 61  aaagcaaactgcacagtgctctgagacaccatggtgagaatctggacttcaaggtcagaa 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaagcaaactgcacagtgttctgagacaccatggtgagaatctggacttcaaggtcagaa 742

                                                                       
Query: 121 gatgctttctaaggcagctgagttacagagtgatgaaggagaaagatgtcggctcacctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatgctttctaaggcagctgagttacagagtgatgaaggagaaagatgtcggctcacctc 682

                                                                       
Query: 181 tccatctgactggctttcttttcccttgctttgtctgtatgagctttagaaggacttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccatctgactggctttcttttcccttgctttgtctgtatgagctttagaaggacttgaa 622

                                                                       
Query: 241 atgactggtgggaaggctgagcactagaaagacccaggcagcagcagtttctccctggca 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atggctggtgggaaggctgagcactagaaagacccaggcagcagcagtttctccctggca 562

                                                                       
Query: 301 gagtactgcagcctcatagttcctcctgggctgtattcacagaaactaaaagtcaggtca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagtactgcagcctcatagttcctcctgggctgtattcacagaaactaaaagtcaggtca 502

                                                                       
Query: 361 accagccacagacccgtggaaaggactgctgttgtgtgcagcgccacaatcctggagttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accagccacagacccgtggaaaggactgctgttgtgtgcagcgccacaatcctggagttt 442

                                                                       
Query: 421 catgcagatatggaaagaggcaggaaatgaatcagaagacctaaaggtcaagtgcattaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgcagatatggaaagaggcaggaaatgaatcagaagacctaaaggtcaagtgcattaa 382

                                                                       
Query: 481 ccatgtgttcttcgtggagacagacacttggactctcaaccacggttatgggcgctggta 540
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 381 ccatgtgttcttcgtggagacagacacttggactctcaaccacggttatatgcgctggta 322

                                                                       
Query: 541 gtagaactcacactacacatctagaggtctttgcagatctctgaacagaagactgattga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagaactcacactacacatctagaggtctttgcagatctctgaacagaagactgattga 262

                                                                       
Query: 601 aggacttctggcttcctgcatctccactctagctattctaatgtcttctgctcagtgctg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggacttctggcttcctgcatctccactctagctattctaatgtcttctgctcagtgctg 202

            
Query: 661 g 661
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1060
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1050
Effective search space:   683550
Effective search space used:   683550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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