BAC Information

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BAC

Clone NameMSMg01-304F18
Chromosome16 (Build37)
Map Location 67,803,137 - 67,803,735
singlet/doubletsinglet
Overlap genenone
Upstream geneCadm2, 9330155M09Rik
Downstream geneEG626609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304F18.T7 (MSMg01no304_f18.b1)MSMg01-304F18.TJ (MSMg01no304_f18.g1)
ACCAG429668AG429669
length1,3191,288
length of high quality
(start - end)		702 (132 - 833)259 (84 - 342)
definitionCHROMAT_FILE: MSMg01no304_f18.b1 PHD_FILE: MSMg01no304_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:53 2005CHROMAT_FILE: MSMg01no304_f18.g1 PHD_FILE: MSMg01no304_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCGGTAANNNNNNNNTCAGTGGGCGCTNXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATCTGTGATTTGTTCACAATATACTCCCAAGAGAGA
TTAGTAAGGACGTGTTTTCATCATACACTAAGGTAGAAAGATGAAACACA
AATAAAATTTTAAAGAATCTACTGGCTTTGAGACCATTTAACATCCTCAC
ACTACAGGAGAACCTGTATGATACAAAATGATCATGAGTCTAAAACATGT
CTCATTTTCGGGTAAGGTGGGTAAGGCCTTTGTATGTATTAAATAATTAA
CTAATGAATTATTCACTCATTCATTCACTTGTATTTCAGTATACTGGTAT
ACATCAGGGAGTGATTTGTCCGAATCCCTATCTATTCTACTTGTATGCAA
ATTCGTTCTGTTCCTAACAATCTGAACTCTAAGAAGTTTTAGAGCACTGC
ACTGTAAGAACAAAAGGAAAAGAAGCTTGTGGAGGGGCAATAAGCATACA
AAAGTGATAACTGAGGAAATAGAGATTAAAATTTGAATGACTTCAAAACC
TAAATATTGACTTAAGTATTTTAGCAGATGCTGGCGAGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTAGTGGGATTGCAAGCTTGTACAACCACTC
TGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGA
GGATCCCACAATACATCTCCTGGGCATATATCCAGAAGATGTTCCAACCA
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACA
GAANATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAGAA
TGAATTTATGAAATTCCTACGCAAATGGATGGACCTGGAGGGCATCATCC
TGAGAAAGGTAAACCAATCCCAAAAAACTCGCCCAAAATGTACCTTCTTG
ATAAGGGGAATTACCCCCCAATTTTAAAAACCCCCAAAATAAAAAACATT
TTGCTTAACCCGGAAACTCCGAAGAACAAAAAACCTAGGGGGGGCCCTTT
GCCCTTCTTTAAATAGAAAAAAAACCCCGGGAGGGGTTCTAAAAAAAATT
TTGACTTGAACAAAGGAGGACCCCTAAAACGGCTATATTGGGATCACCCG
AAACACTTTCAAACTAAACCCCGCTAAAATAAAATTTTTTAAAACCAATA
TTGGTCTTGGAAATAGCGGCCGGAACAAAAAGGAGTTCCTCCTTTTGTGT
AAGGCCCCTGAAAAAAAAA

NCCGATGCATNNNNNNNAAGATGTGAGGCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATTGGCAAGAAAGGC
TCAGAGTTGGCAGACGAGAACACTTTAGCAGGCTCTTCTCAGAGTTTTGT
CAGTTTAAACACTGGCAAAATGAAACAAGAGCTCATATCTCTAGCTGCAT
ATGTAGCAGAAGATGGCCTAGTAGGCCATCATGGGGAAGAGACCCCTTGG
TATTGCAAACTTTATATATGGTGTACAGGGGAATACCAGGGCCAAGAAGT
GGGAGTGGGTGGGTAGGGGAGCAGGGTAGGGAGAGGGTATNGGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTNTTTTTTTTTNNNNNNNNNNTGNTNNNNTTTTTTTGTTTT
NTNNNNNTNNTGTNTTTTTTTTTTTTNTTNTTTTTTTNNNTGTTNTTGTT
TTGTTTTTTTTTTGTTTGGGTGTGGGTTTGGTTGGTNTTGGGNGGGTTTT
TTTTGTTTGGTTTGGGGTGTTGTTTTTGTGGTTGTTTGTNTTGTGTTTTT
TGGTGTGTTNTGTGTGTTTGTTTGGTGTTGTTTTTTTTTGTTGGTTGTTG
TGGGTNGTNGGTTTTTTTTGTTTTNTTNGGTTTTGGTTTGTTGTTTTTGT
TTGTTGTTTGTTGTTTTTGGTNGGGNTTTTTGTTTGGTGTGTTTGTTTNG
TTTTTTTGTNGTTGTNTTTTTGGTTTTTGNTTGTNTTTGTGGGTNTTGTT
TTTTTTTTTTTTTNTTTTTTTTTTGTTGNTTTGTTTTTTGTTTNTGTTTT
GTGTTTTTTTTTTGTTNNGTGGNNTTTTTTTGTTTTTGGTTTTTTGTTGG
GTTTTTNTGGTTTTGTGTTTTGTTTTTTTTNTTTNNTTTTGTTTTTTTTT
TNTGTTTGTTGTTTGTGGTTGTTNTGTTTTGTNTTTGTTCTTGNTTTTTT
TTTNTTTTGNTTTTTGTTTTTTTTTTTGGTTTTTTTTTTTTTTTTTGTTT
TGTTTTTTGTTTTTTTTTTTGGTTTTTTTTTGTTTTTGGTTTGTTTTGTT
TTTTTTTTTTNTTTGTGTTTNTTGTTTTTTGGTGTNGTGTTTTNTGTTTG
TTTTTTTGTTGTTTGGTTGGNTNTTGGTGTTTTTTTNTTTGTTTTGTGTT
TTTTNNGCCCTTTTTTTTGNNGTTGTTTTTTGTTTGTTTTGTGTTTTTTG
TTTTCTNTTNTGTTTTTGTTTTTTTGTNGTTTGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_f18.b1 MSMg01no304_f18.b1 CHROMAT_FILE:
MSMg01no304_f18.b1 PHD_FILE: MSMg01no304_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:53 2005
         (702 letters)



>mm_chr16_67803137_67804238
          Length = 1102

 Score = 1104 bits (571), Expect = 0.0
 Identities = 592/599 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   agaaagatgaaacacaaataaaattttaaagaatctactggctttgagaccatttaacat 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 599 agaaagatgaaacacaaataaaattttaaagaatctactggctttgagaccagttaacat 540

                                                                       
Query: 64  cctcacactacaggagaacctgtatgatacaaaatgatcatgagtctaaaacatgtctca 123
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 539 cctcacactacaggagaacctgtatggtacaaaatgatcatgagtctaaaacatgtctca 480

                                                                       
Query: 124 ttttcgggtaaggtgggtaaggcctttgtatgtattaaataattaactaatgaattattc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttttcgggtaaggtgggtaaggcctttgtatgtattaaataattaactaatgaattattc 420

                                                                       
Query: 184 actcattcattcacttgtatttcagtatactggtatacatcagggagtgatttgtccgaa 243
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 419 actcattcattcacttgtatttcaatatactggtatacatcagggagtgatttgtccgaa 360

                                                                       
Query: 244 tccctatctattctacttgtatgcaaattcgttctgttcctaacaatctgaactctaaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tccctatctattctacttgtatgcaaattcgttctgttcctaacaatctgaactctaaga 300

                                                                       
Query: 304 agttttagagcactgcactgtaagaacaaaaggaaaagaagcttgtggaggggcaataag 363
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 299 agttttagagcactgcactgtaagaacaaaaggaaaagaagcttgtgcaggggcaataag 240

                                                                       
Query: 364 catacaaaagtgataactgaggaaatagagattaaaatttgaatgacttcaaaacctaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 catacaaaagtgataactgaggaaatagagattaaaatttgaatgacttcaaaacctaaa 180

                                                                       
Query: 424 tattgacttaagtattttagcagatgctggcgaggatgtggagaaagaggaacactcctc 483
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 179 tattgacttaagtattttagcagatgctggagaggatgtggagaaagaggaacactcctc 120

                                                                       
Query: 484 cattgttagtgggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctc 543
           ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 119 cattgttggtgggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctc 60

                                                                      
Query: 544 agaaaattggacatagtactaccggaggatcccacaatacatctcctgggcatatatcc 602
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  agaaaattggacatagtactaccggaggatcccacaatacatctcctgggcatatatcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space:   755664
Effective search space used:   755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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