Query= MSMg01no304_g18.b1 MSMg01no304_g18.b1 CHROMAT_FILE:
MSMg01no304_g18.b1 PHD_FILE: MSMg01no304_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:02 2005
(743 letters)
>mm_chr16_91443720_91444863
Length = 1144
Score = 1379 bits (713), Expect = 0.0
Identities = 737/745 (98%), Gaps = 3/745 (0%)
Strand = Plus / Plus
Query: 1 gtctttgatacatgcagataaaacaaaaaaacacaaaaaaaaaacaaacaaaacaaaaca 60
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 201 gtctttgatacatgcagataaaacaaaaaaacacacaaaaaaa-caaacaaaacaaaaca 259
Query: 61 agacacacacacaaaaaaa-ctatagttagccaaagcacacatgcaagagaaaaacaaaa 119
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agacacacacacaaaaaaaactatagttagccaaagcacacatgcaagagaaaaacaaaa 319
Query: 120 ctagtaaaaactgtgagaccccgacttagagcgtttctccctggaaggtaaagcccctgg 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 320 ctagtaaaaactgtgagaccccgacttagagcgtttctccctggaaggtacagcccctgg 379
Query: 180 atgttccccaagcttgttttccctgatctttaaaaatacagctagaaaaaagctctttgt 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atgttccccaagcttattttccctgatctttaaaaatacagctagaaaaaagctctttgt 439
Query: 240 tctctatagcctgcaaaaagcctttttgtttctatactgtacaaccagagatgcctgcct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctctatagcctgcaaaaagcctttttgtttctatactgtacaaccagagatgcctgcct 499
Query: 300 tcctatgccgaggacacagagataaaaattcagaaagaactcactccccactcctgcctt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcctatgccgaggacacagagataaaaattcagaaagaactcactccccactcctgcctt 559
Query: 360 gtaaatttcaccaaggacacccggaagagaagaactcttcccaactcctcccaactcctc 419
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 560 gtaaatttcaccaaggacacccggaagagaagcactcttcccaactcctcccaactcctc 619
Query: 420 ccaactcctcagctagctgttaaaagccccctactgtcacccctggggtcaaactcccct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccaactcctcagctagctgttaaaagccccctactgtcacccctggggtcaaactcccct 679
Query: 480 gccctgcacggcagagggacttccgtcctcagctagctgataataaaatctcttgcagtt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gccctgcacggcagagggacttccgtcctcagctagctgataataaaatctcttgcagtt 739
Query: 540 tgcatcaggtgtggttttctctcgagatgttggggtgttggccagctcatcccgggactt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgcatcaggtgtggttttctctcgagatgttggggtgttggccagctcatcccgggactt 799
Query: 600 gagtgaaggcccagcatcagcggtcttacaaaactattccagataaaa-caaatgtagct 658
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 800 gagtgaaggcccagcatcagtggtcttacaaaactattccagataaaaacaaatgtagct 859
Query: 659 acccaggttattttgatgtgaaggtcttggtgttgctgtagctctacggtgcatatgttg 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 acccaggttattttgatgtgaaggtcttggtgttgctgtagctctacggtgcatatgttg 919
Query: 719 aaatccagtcctggtatactgagag 743
|||||||||||||||||||||||||
Sbjct: 920 aaatccagtcctggtatactgagag 944
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 743
Length of database: 1144
Length adjustment: 10
Effective length of query: 733
Effective length of database: 1134
Effective search space: 831222
Effective search space used: 831222
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_g18.g1 MSMg01no304_g18.g1 CHROMAT_FILE:
MSMg01no304_g18.g1 PHD_FILE: MSMg01no304_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:02 2005
(788 letters)
>mm_chr16_91609673_91610860
Length = 1188
Score = 1371 bits (709), Expect = 0.0
Identities = 768/789 (97%), Gaps = 4/789 (0%)
Strand = Plus / Minus
Query: 2 tctgacctatctgcttgagtctctgttctgaccgccctacct--tttaccagctgaaata 59
|||| ||||||||||||||||||||||||||| |||||| | ||||||||||||||||
Sbjct: 853 tctgtcctatctgcttgagtctctgttctgactgcccta--tagtttaccagctgaaata 796
Query: 60 aacccttccctccccaagctgattttggtcacaaaatagaaacacaaggcaagaccgtga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aacccttccctccccaagctgattttggtcacaaaatagaaacacaaggcaagaccgtga 736
Query: 120 tttgccctaggggagctttgattacaggaagagtgggcgctgctgtgcttttggctgtga 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 735 tttgccctaggggagctttgattacaggaagagtgggcgctgctatgcttttggctgtga 676
Query: 180 gcctttgctatgcagccgaacaggccttgaccttgtaattctcctacttcggtctgccaa 239
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 675 gcctttgctatgcagtcgaacaggccttgaccttgtaattctcctacctcggtctgccaa 616
Query: 240 gttcagagatgaggcgtgtgccaccactcccagctggcatctttcagatggcccatgctg 299
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gttcagagattaggcgtgtgccaccactcccagctggcatctttcagatggcccatgctg 556
Query: 300 atggcagtctgccttacacatctgggcaaaatggagctcttccaacaggaagccaggcct 359
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atggcagcctgccttacacatctgggcaaaatggagctcttccaacaggaagccaggcct 496
Query: 360 tttgagttggtctaagttagaagcgttctggagtcagaaacaggaggatttacagttcaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tttgagttggtctaagttagaagcgttctggagtcagaaacaggaggatttacagttcaa 436
Query: 420 ggcacgcctgggctacctagtaaaagtctctctcaaaacaaaaacaaaaattagtgatgg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ggcacgcctgggctacctagtaaaagtctctctcaaaacaaaaacaaaaattagtgatgg 376
Query: 480 agttgcaagtgtgtaaccccatcactcaggatgtggaaaccagaatcagaattcaaggcc 539
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cgttgcaagtgtgtaaccctatcactcaggatgtggaaaccagaatcagaattcaaggcc 316
Query: 540 atcctacatcggcctgacgagccaaactgctcccttctccttcaactttggaaaaagtgg 599
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 315 atcctacatcagcctgacgagccaaactgctcccttctccttcaactttgcaaaaagtgg 256
Query: 600 tctgagaagttgtgactcaggctggaaagatgccctggtggctaaaagtactttttgctg 659
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 255 tctgagaagttgtgactcaggctggagagatgccctggtggctaaaagtactttttgctg 196
Query: 660 ggatccaaacctgggtccccagcacctacatgttagcttacaattgtctctaactccatt 719
|| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 195 agacccaaacctgggtccccagcacctacatggtagcttacaattttctctaactccatt 136
Query: 720 ttcagggggtctgatgccctcttctgacctccatgagtgtcccatacaagtggtgcacat 779
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ttcagggggtctgattccctcttctgacctccatgagtgtcccatacaagtggtgcacat 76
Query: 780 atacatgtg 788
|||||||||
Sbjct: 75 atacatgtg 67
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 788
Length of database: 1188
Length adjustment: 10
Effective length of query: 778
Effective length of database: 1178
Effective search space: 916484
Effective search space used: 916484
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
