BAC Information

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BAC

Clone NameMSMg01-304K19
Chromosome16 (Build37)
Map Location 43,702,119 - 43,702,593
singlet/doubletsinglet
Overlap genenone
Upstream geneBC002163, LOC667484, Zbtb20, LOC100043314
Downstream geneDrd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304K19.T7 (MSMg01no304_k19.b1)MSMg01-304K19.TJ (MSMg01no304_k19.g1)
ACCAG429881AG429882
length1,2461,319
length of high quality
(start - end)
476 (88 - 563)590 (89 - 678)
definitionCHROMAT_FILE: MSMg01no304_k19.b1 PHD_FILE: MSMg01no304_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:38 2005CHROMAT_FILE: MSMg01no304_k19.g1 PHD_FILE: MSMg01no304_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCGCTTTTNNNNNATCATTGGGCGCATXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTGGGCTGCATGTGACCTTTAAGGCAAACTGGCGTGG
TAGGGCCTCACCAAGCACGCTTGAGGAGGGCGGCTGCCAGATGTGGAACC
TTGTTATGATTGGTTATTTTTCAGTGTGTTGTCCTTATCCGGCCACCAGG
TAACCGCTGTCAGGTACTTGGGGCCTCTTCTGCTGCATTAAACAGTCAAG
TCAAAGGGCCCAGACCTGCTGAGATCTGAATTGGCCACTGTGACTGTCAG
CTATGTCGGGTTGCCCAGCCTGTGATTTATTTGAAAAAGAATAATAAACG
GACCATGAGTCATTTTCAGCAACCACAGCTTCGGGAGCCAAACAGTAAAT
TCTGAGAAACCAATTTCCACTGTGGGCAGAACCCAGCTCCTGTGTCTGAT
CGTCTGGCAAGCTTCGGAATAGAGAGCGCTGATAAAATAGCAGCAGGTGC
AAAACAGCCACAACTGGCCAGAGACTGGCAGGCCCTGGGGGCGGAGGATG
GGGAGGGGACGGNNNNAGNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGNNNNNNNGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNGNTNNNNTTTTT
TTTNTTTNNTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNGNNTT
TTTTNTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTNTTNTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTT
TTTTTTTTTNTTGTGTTTTTTTTTTTTTTTTTTTTTTGTTTTTGTTTTTT
TTTTTTTTTTTNTTTNTTTTTTTTNTTTTTTTTTTTTTNGTTTTTTGTTT
TTTTTTTTTTGTTTTTTGTTTTTTGGTTTGTTTTTGGTTTNTGTTTTTTG
TTTTTTTTTTTTTTTTGTTTTTTTTTGTTTTTTTTTTTTTGGTTTTGTTT
TTTTNTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTGTTTTT
NCCCGATTTTTTNNNNTAGAAGTGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTAGGTTAGTTCTGTACC
CCATTTTTAATGGGGTTATTCGAATTTCTGTAGTCTAGCTTCTTGAGCTC
TTTGTATATACTGGATATTTGTCCCCTATCAGATTTAGGATTGGTAAAAA
TCCTTTCCCAATCTGTCGGTGGCCTTTTTGTCGAAAGGATGGACTATCCA
GAGATAAGCCAACCTGGGGATCTACCCCATAATCAGCCACCAAACCCAGA
CACTATTGCATATGCCAGCAAGATTTTCCTGAAAGGACCCTGATATAGCT
GTCTCCTGTGAGGCTATGACAGTGTCTGGCAAATACAGAAGTGGATACTC
ACAGTCATCTATAGGATGGAACACAGGGCCCCCAATGGAGGAGCTAGAGA
AAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACAACAA
TATGAACTAATCAGAACCCCCCAGAGCTCGTGACTCTAGCTGCATATGAA
TCAGAAGATGCCCTAGTTGGCCATCATTGGGAAGAGAGGCTCCTTGGTCT
TACAAATTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAGAAGTGG
GAGTGGGTAGGTAGGGGAGCAGGGTGGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTNNNNNNNTNNNTTNNNNTTTNTTTTTTTTTTTNT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTNTTTTTTTTTTTTNTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTNTTTTTTTTTTTTTTTTTTTTNTTTTTTTNTTTTTTTTTTN
TTTTTTTNTTTNTTTTNTTTNTNTTNTTTTTTTTTTTTTTTTTTTTTTTT
TTTNTNTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTNNN
NTTTTTTTNNTNTTTTTTTTNTTNTTTTNTTTTNTTTTTTTTTTTTTTNT
TTNTTTTTTTTTTTTTTNTTTNNNTNNNTTTTTNNTTTTTGTTTNTTTTT
TGTTTTTTTTTTGTGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_k19.b1 MSMg01no304_k19.b1 CHROMAT_FILE:
MSMg01no304_k19.b1 PHD_FILE: MSMg01no304_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:38 2005
         (476 letters)



>mm_chr16_43701919_43702794
          Length = 876

 Score =  888 bits (459), Expect = 0.0
 Identities = 471/475 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaactggcgtggtagggcctcaccaagcacgcttgaggagggcggctgccagatgtgga 60
           |||||||||||||||||||||||||||||| |   |||||||||||||||||||||||||
Sbjct: 201 caaactggcgtggtagggcctcaccaagcaagagggaggagggcggctgccagatgtgga 260

                                                                       
Query: 61  accttgttatgattggttatttttcagtgtgttgtccttatccggccaccaggtaaccgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accttgttatgattggttatttttcagtgtgttgtccttatccggccaccaggtaaccgc 320

                                                                       
Query: 121 tgtcaggtacttggggcctcttctgctgcattaaacagtcaagtcaaagggcccagacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcaggtacttggggcctcttctgctgcattaaacagtcaagtcaaagggcccagacct 380

                                                                       
Query: 181 gctgagatctgaattggccactgtgactgtcagctatgtcgggttgcccagcctgtgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgagatctgaattggccactgtgactgtcagctatgtcgggttgcccagcctgtgatt 440

                                                                       
Query: 241 tatttgaaaaagaataataaacggaccatgagtcattttcagcaaccacagcttcgggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttgaaaaagaataataaacggaccatgagtcattttcagcaaccacagcttcgggag 500

                                                                       
Query: 301 ccaaacagtaaattctgagaaaccaatttccactgtgggcagaacccagctcctgtgtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaaacagtaaattctgagaaaccaatttccactgtgggcagaacccagctcctgtgtct 560

                                                                       
Query: 361 gatcgtctggcaagcttcggaatagagagcgctgataaaatagcagcaggtgcaaaacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatcgtctggcaagcttcggaatagagagcgctgataaaatagcagcaggtgcaaaacag 620

                                                                  
Query: 421 ccacaactggccagagactggcaggccctgggggcggaggatggggaggggacgg 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccacaactggccagagactggcaggccctgggggcggaggatggggaggggacgg 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)