BAC Information

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BAC

Clone NameMSMg01-304O11
Chromosome16 (Build37)
Map Location 52,419,363 - 52,419,684
singlet/doubletsinglet
Overlap geneAlcam
Upstream geneCblb
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304O11.T7 (MSMg01no304_o11.b1)MSMg01-304O11.TJ (MSMg01no304_o11.g1)
ACCAG430043AG430044
length1,2671,299
length of high quality
(start - end)
324 (92 - 415)574 (89 - 662)
definitionCHROMAT_FILE: MSMg01no304_o11.b1 PHD_FILE: MSMg01no304_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:09 2005CHROMAT_FILE: MSMg01no304_o11.g1 PHD_FILE: MSMg01no304_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCGTTATCTNNNNNNATCATTGGGCGCTATAGACTCCTATAGGGAGAG
GATCCGCGGAATTCAGTATTTCTCATTAAAGCCCATACTGTTCATTCAAC
AATTACACTGGTTTTTGAGTATACTTATTTTATACTCATTTTTAGCCATA
CTTTATATTTGGTCCAAACTGGCAAAAAAAATAAAGTTGTCTTTGTCTTC
AGAGATCTTAAGAGTTAGTTTTCAAAGAATCCTCCATTGAGGTAGAAAAT
ACAACACGGTGTGTGTAGGGTGGTGGTTAGACTATAGAGTGCCACAGGGT
TTAAGGGTGGGATCATAGGATTGGATGAGGAGCATAGGAGTGTCAGAAAA
ACATTCAGAGAAGGTTTTTGGACCTCGTGAAGAGCAGCTAGGAGCTCAAA
GATGTCTTCCAGGCTGATGTGAGGTGGGCAGAGGCATTCAGAGAGTATGC
TGGGTGACAGTGCCCCAAAAGCTGAGCCTTGAGGACAGAGATGGCACAGA
ACAGATGAACAAGAAGAAATTCAGCAGAAAGAAGTGCCAGGAGTTCTAAT
ATGGGTGGTGTTAATAATTCTATACTTTACAGTAGAGGTAAGAGGCAGCT
GAATCTTTTTAATGAAGAAGTAATATCCTTAGACTTGAAATTTTTAAAAT
TTCAGAAATATCATTTATCCACTACTAATGATGGAAGAGAAATATGGAGA
GATAATTAAAAAGTTTAATTCACTAATTTTGTTTGTCTGTTCAGGTATTA
TATCTAATATATTTAAAAATTAAAACAAATTATATAAAAGACCTTTTTTT
TTTTTTTTTTTTCATTATCTAAATTACTTGAATTATACTTTATGTTCTAA
TATTAAATAACTATATTATACATTATTATAATTTTTTTTTTTTCTCAATA
TACATTTTAGTTATTTTTTATATTTTTCTTTTTTGCTTTCTTTTTGCATT
TTTGTTACTCTAATCATTCATCCTTACAATTTTATATTTTTTATCTTTAA
TTTAATAACTATAACATATCATACACACTATATATATTTATATTTTATTT
ACTTATTCTTATTTTCTCTATTCTTCTCTTATCTACCATAATTTATTCAC
TTCTATATTGTAATTTCACATATTATCTCATCTAATTACAATATATATAC
ATACACTTTTGNCAAATTATTTAATTTTTAATTACACATAATACATCTTG
ATAATAATTCATATTATTATCTCATTCNCTTCACAAACATTATATTTTTC
TTTACATTCTAATAATA
NNTTCTATTTTATNNNNACTGCATGGAGGCTGGGGCGCCXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTATCCTTAGCCACCAA
GGGAAGGCAAATTAATACTCTCTGAAATTTTATCTCACCAAAGTCAGAAT
GACTGTTTAAAAAGGAAAAAGAATGTTGGCATGTATGTGTGGGGGGAGGG
GTGCACCTATTCACTGCTGGTGAAAGTAGAACTTATGCAGCCAAAGTAGA
ATATGTATGAAAGTTCCTCAAAATTTTCAAAGTATATCTACCATTTGATT
GAGCTATACCACTCTTGGGAATGAACCTCAAGGACTCTGTATACTACTAT
AGGCATATATAGGTTCATCCATGCTCTATTCATCAATAATTAGTATATGA
AAGCAGCCTAGATGTCTTTTAACTGATGAATGAGTAGTGAAAATATGGTA
TATTTATAAAATAGTATATTAATGAGTTAGCAATAAAAAAATGAAATTTG
CTGGTAGTAAATCAGTGGATCTGGAAACAATCATGATGAGTGAGGTATCA
AAGACACAGGAAGACAAATGTCACATATGTTCTTTCATATATAGATGTTC
TCTTTGAATATTCCTAGATGTATGTTTGATTTGAAATATCCAAAGGTGTC
AGGAAATTACTAAGCAGATGTGGGGCTTTTATGAGAGAGGAGATAAAAAA
AAAACACTAGTATAAAAATTAAAAAGTAATAATGGAACAGGAAGAGTTTA
ATTGGCATAGGAGTGGGAGGGAGTTGTTAATTATCTTCTTCTTTTTTTTT
TTTATAATAATCTTTCCATTTAATTAAACTATCATATATCCTTTATTTCT
TTTCTACTTATCTAATAATCATATTTTTGTTTCCTATTTCCACATTCCCT
ACATATTCTTCCATATCTATTTTTTCATTCACTCTCTCTTATACATACTT
AATTACCATCTTTCTTATTATATATCTTACTTTGTTCTTTTCCCAATTAT
TATATTTTTTTTCTCATATAATTATTTACTTTACACTTTTACTTTTTTTT
AACTTATTTTCCTATTTTCTAGTAATTATTAATTATATTTATTCTTATTA
TCTTTTTCTTTTTATCTCTATCATACAATAACTACATCACCATCTTAATA
TATAAACACTCTTTACCTTTTCCTGCTTCTTATCATTACCTCTTATATTA
TTATATCTACCATATTTTATTTTCTCTTCATATTTTACTAAATTAATCAC
TTGCTTAATAACTCTTTCCTAACTATCTTCCTCTATCTTTTAACTACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_o11.b1 MSMg01no304_o11.b1 CHROMAT_FILE:
MSMg01no304_o11.b1 PHD_FILE: MSMg01no304_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:09 2005
         (324 letters)



>mm_chr16_52419163_52419884
          Length = 722

 Score =  600 bits (310), Expect = e-176
 Identities = 320/324 (98%), Gaps = 2/324 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattcaacaattacactggtttttgagtatacttattttatactcatttttagccatac 60
           |||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tcattcaacaattacactg--ttttgagtataattattttatactcatttttagccatac 258

                                                                       
Query: 61  tttatatttggtccaaactggcaaaaaaaataaagttgtctttgtcttcagagatcttaa 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 259 tttatatttggtccaaactggcaaaaaaaataaagttgtctctgtcttcagagatcttaa 318

                                                                       
Query: 121 gagttagttttcaaagaatcctccattgaggtagaaaatacaacacggtgtgtgtagggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gagttagttttcaaagaatcctccattgaggtagaaaatacaacacggtgtgtgtagggt 378

                                                                       
Query: 181 ggtggttagactatagagtgccacagggtttaagggtgggatcataggattggatgagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggtggttagactatagagtgccacagggtttaagggtgggatcataggattggatgagga 438

                                                                       
Query: 241 gcataggagtgtcagaaaaacattcagagaaggtttttggacctcgtgaagagcagctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gcataggagtgtcagaaaaacattcagagaaggtttttggacctcgtgaagagcagctag 498

                                   
Query: 301 gagctcaaagatgtcttccaggct 324
           ||||||||||||||||||||||||
Sbjct: 499 gagctcaaagatgtcttccaggct 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 722
Length adjustment: 9
Effective length of query: 315
Effective length of database: 713
Effective search space:   224595
Effective search space used:   224595
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)