BAC Information

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BAC

Clone NameMSMg01-304P14
Chromosome16 (Build37)
Map Location 79,352,356 - 79,353,067
singlet/doubletsinglet
Overlap genenone
Upstream geneCxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik, Chodl, Prss7
Downstream geneEG383172, 1700066C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304P14.T7 (MSMg01no304_p14.b1)MSMg01-304P14.TJ (MSMg01no304_p14.g1)
ACCAG430093AG430094
length1,3051,290
length of high quality
(start - end)		719 (134 - 852)753 (90 - 842)
definitionCHROMAT_FILE: MSMg01no304_p14.b1 PHD_FILE: MSMg01no304_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:19 2005CHROMAT_FILE: MSMg01no304_p14.g1 PHD_FILE: MSMg01no304_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCAATTTNNNNNNNNCCAGTGGGCGCTATAGACTCCTATAGGGAGAG
GATCCGCGGAATTCCAATGTCCAAAATAATCTTTAAAACATCATCAGAAG
AAAGCTACTCCTCACTGTTAACTAACTGATATAGCTTTGCACAATGTTTC
ACAATTAAAGTTCTTAATGTTCTCTGGTTATATAGAAAAATTTGTCAATT
GCATTATAAACAAGTTTCATGCAAAACAGAAGTTACTATTTTTTGGCTTA
TGGGTATCATCCATCAGTATTTTACAAAGGTTCTGTCTTAGTCAGCGTTT
CTATTCCTGCACAAAACATCATGACCAAGAAGCAAGCTGGGGAGGAAAGG
GTTTATTCAGCTTACACTATTCACATTGCTGTTAATCACCAAAGGATGTC
AGGACTGGAACTCTAGCAGGTCAGGAAGCAAGAGCTGATGCAGAGGCCAT
GGAGGGGTGTTACTTACTGGCTTGCTTCCTCTGGCTTGTTCAGCCCACTC
TCTTATAGAACCAAAACTACCAGCCCAGAGATGGCACCACCCACAAGGGG
ACCTCCACCATTGGTCACTAATTGAGAAAATGCCTTACAGCTGGATCTCA
TGGAGGCATTTCCCCAACTGAAGTTCCTTTCTCTGTGATAACTCCAGCCT
GTGTCAAGTTGACACAAAACCAGCCAGTACAGGTTCTTAGGCTTATTTTA
CAGGCAATGTGTTTTAATTTATAATGAGAAAAAAATTAAGTATAAGATAG
ATATGTCAATAGTTTAAAGGTTGTAATCTTAATGACATAATTATACATAT
TTATTTGAATATTTGACTATGAGATACAAATTTCAGTGTCAGTGTGCATT
AGTGAAGTTTAGGAGTTAATTATTTATATACAGTACTTGAGAAAATTAGT
CATACTTGATTTTTTATGTACATGAATTTCACCATTGTGTTGGTAAGGGC
CATGGTTTCTTTTTCTCTGACCCATTTTTAAAATTCAAGTCGAAAAACAT
GACTCCTGGATTTGTCGAAAAACTTCAGTGACTAAAAAAATCTCTTGGGG
GGGAAAGGCCCTTTAAACACTTTAAACCCTTAAAAAAAAACTTTTTTTAT
TTTTTAAAAAAATTTTTAAAAATTTTCCTCGCTAATTTTTTAGGGAACCC
AAAGGCCCCCATTTAACCCCCCAACCCCAAATCCCAACCCCCCTTTTTGT
CCTGGGGTCCCTCCTTGGGGAACTAAAATAAGAACAAAGACCCCTCTTTT
TTAGGCTAACGACCTTTTTTTTATTGTCTTATAAAAACTCCCTAATATAA
ATATT

NCCCGCTTTTNNNNNCCTCAAGGNTAGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTATTGTTTTGTCCTCTACCA
TCATCATGAGATATGCTCTTTATCCAGGTCTACCTTTTCAGGTGTGTTAG
GGTGTCCTGGACTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAG
TGGTCCTGGTTTCTGTTAGTAGGATTCTTATGTTTACCTTTCGCCATCTG
GCAATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCC
TCTGTTGATTTTGTTACCCTCAATCAGCAGGCGTGGGAGACAAGCTCTCT
CCTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGCAGGCAAGCTCTCCTCTT
TTGGGGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAG
GTGAAGGCCCAAAACAGGATCGTTCCCAGAAGCTGTGTTGCTTTGGCCAG
GAAGGTGGCCGGTTGTCTGGAGTCGAAGATGTCGCCGCCTCAGAAGCTCT
GTAGCTCTCGCCAGGAAGGTGGCCGGCTGCCTGGAGCTGAAGATGGCGCC
GCCCCAGAAGCTCTGCGACTCTCGCCCGTCCCAGAAACGGCTGGCCTCTG
TATTCCACATGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAGCC
AAGAAGGCTCCCACCGGCGCCTGTGACACAAACCTCTCAGGCCGGGCAGA
CCCCCGTGCTCTCACCAGGAAGGTGGCCGGCTGTCACTGTCCTAATTTTT
AAGCACCATAAAATTTACTTGCTGCTGTCTAGACTTCCCAAACGATTAAT
CTGACTTTAAAATGAGAATTGCTAAACTCACTGCTTCAAATTTCTCCCCT
ACATAACCAACAACTTTTTAATTGAATTTCTTTTTCAAGCTCCTCTTATG
TGGAAATTTTCTTTGTTGACTCTTTCTGCGAATATCTTTTATAAATTAAC
CTTCCCCCCTTCCGGGATTTAACTCCTATAGCACCCCTGAGGTTCTCAAG
AAGGTTCACGCCCTGTGTTTGAATAGGTTAGAAAACTTTATTTGCTTGAA
GGTCTTTTAAAAGGTTTTTGGTTTTGGAAGCCGGAAAAAAAAACTTTTTC
CTTTGGGAAACTCTTTCCTTCTATGTTTTAAAAAAAAGGTTTGCCCCCAC
CCACCAAGGGGAGATTTTTTTTTTTTCTTATTTGGGAGAGGTCCACCCAC
ACCACAAAAAAGGTCCTCCCTTGAAACTTTCTCTTTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_p14.b1 MSMg01no304_p14.b1 CHROMAT_FILE:
MSMg01no304_p14.b1 PHD_FILE: MSMg01no304_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:19 2005
         (719 letters)



>mm_chr16_79352156_79353274
          Length = 1119

 Score = 1162 bits (601), Expect = 0.0
 Identities = 688/725 (94%), Gaps = 19/725 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctttgcacaatgtttcacaattaaagttcttaatgttctctggttatatagaaaaattt 60
           |||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 gctttgcataatgttttacaattaaaattcttaatgttctctggttatatagaaaaattt 260

                                                                       
Query: 61  gtcaattgcattataaacaagtttcatgcaaaacagaagttactattttttggcttatgg 120
           ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 261 gtcaattgcattataaacaagcttcatgcaaaacagaaattactattttttggcttatgg 320

                                                                       
Query: 121 gtatcatccatcagtatttt-acaaaggttctgtcttagtcagcgtttctattcctgcac 179
           |||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||
Sbjct: 321 gtatcatccatcagtattttca-aaaggttctgtcttagtcagcatttctattcctgcac 379

                                                                       
Query: 180 aaaacatcatgaccaagaagcaagctggggaggaaagggtttattcagcttacactatt- 238
           |||||||||||||||||||||||| |           ||||||||||||||||||| || 
Sbjct: 380 aaaacatcatgaccaagaagcaagtt-----------ggtttattcagcttacact-ttc 427

                                                                       
Query: 239 cacattgctgttaatcaccaaaggatgtcaggactggaactctagcaggtcaggaagcaa 298
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 428 cacattgctgttaatcaccaaaggatgtcaggactggaactcaaccaggtcaggaagcaa 487

                                                                       
Query: 299 gagctgatgcagaggccatggaggggtgttacttactggcttgct--tcct--ctggctt 354
           ||||| |||||||||||||||||||||||||||||||||||||||  ||||  |||||||
Sbjct: 488 gagctaatgcagaggccatggaggggtgttacttactggcttgcttctcctgcctggctt 547

                                                                       
Query: 355 gttcagcccactctcttatagaaccaaaactaccagcccagagatggcaccacccacaag 414
           ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 548 gttcagcccgctctcttatagaaccaaaactaccagcccacagatggcaccacccacaag 607

                                                                       
Query: 415 gggacctccaccattggtcactaattgagaaaatgccttacagctggatctcatggaggc 474
           ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 608 gggacctccaccattagtcactaattgagaaaataccttacagctggatctcatggaggc 667

                                                                       
Query: 475 atttccccaactgaagttcctttctctgtgataactccagcctgtgtcaagttgacacaa 534
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 668 atttccccaactgaagttcctttctctgtgatcactccagcctgtgtcaagttgacacaa 727

                                                                       
Query: 535 aaccagccagtacaggttcttaggcttattttacaggcaatgtgttttaatttataatga 594
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 728 aaccagccagtacaggttcttaggcttagtttacaggcaatgtgttttaatttataatga 787

                                                                       
Query: 595 gaaaaaaattaagtataagatagatatgtcaatagtttaaaggttgtaatcttaatgaca 654
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gaaaaaaattaagtataagagagatatgtcaatagtttaaaggttgtaatcttaatgaca 847

                                                                       
Query: 655 taattatacatatttatttgaatatttgactatgagatacaaatttcagtgtcagtgtgc 714
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 taattatacatacttatttgaatatttgactatgagatacaaatttcagtgtcagtgtgc 907

                
Query: 715 attag 719
           |||||
Sbjct: 908 attag 912


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1119
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1109
Effective search space:   786281
Effective search space used:   786281
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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