BAC Information

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BAC

Clone NameMSMg01-305A12
Chromosome16 (Build37)
Map Location 68,592,450 - 68,592,829
singlet/doubletsinglet
Overlap genenone
Upstream geneCadm2, EG626609
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305A12.T7 (MSMg01no305_a12.b1)MSMg01-305A12.TJ (MSMg01no305_a12.g1)
ACCAG430131AG430132
length1,2921,288
length of high quality
(start - end)
411 (44 - 454)384 (72 - 455)
definitionCHROMAT_FILE: MSMg01no305_a12.b1 PHD_FILE: MSMg01no305_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:27 2005CHROMAT_FILE: MSMg01no305_a12.g1 PHD_FILE: MSMg01no305_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCCGCACTGGGCCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTAGGAGTCCAGGTTAGTTAATACTGTTGGCTTTCCTAAGGGATTGC
AATTCCCTTCATCTCCTTCAATCCTTTTAACTCTTCCATAGGGATCCCTG
ACCTCAGTCCAATGCTTGACTGACTATCTGCATCTGTCTCAGTCAGCTAC
TGGTAGATCTGCTCAGGACAGCCATGTTAGGCTCCTGTCTGCAAGCACAC
ATAGCACCTGTAATAGTGCCAGAGATTGGTACTGTCCATGGGATGGATCC
CAATTGAGCTAGGTGTCTCTGCTGTCTCTGCTGCATTTTTGTTCCTGAAT
TTCTTTTGGACAGGAACAATTTTGGTTCAAACATTTTATAAGTGGGTTGT
TTTTTCCATCAACCGACTGGGCATCTGACTGACTACTGGAGGTGGTCTTT
TCTTTTTTTATCCCCCCCCTGNTGGAGAGAGTGCCTCCATAAAAAAGAGG
GAATATGCATGTTATGTACTCACTGATAAATGAAAATTTGCAAAAAATTA
CAAAATGCCCAGGATACATCCCACAGATTCTAAAAAGTTAAACAAGATGG
AAGGCCCAAATGAGGGTGCTTAAACCCCACTTAGAAGGGGGAACAAAATA
ATGAGAGATCAACAGAGGGTAGCACCTCTGTGGGAGAAAAGAGAGGCTCA
GAAGGCCAGGAGAATGAATGGAAATATGCAGCTTTGGCGGTGTGGGTATG
GGTGTAAGTAATCTCTAGAAAGTCCTAGAGATCCTGAGTTGGGGAAGCTT
CCTGGAATCAATGTGGGTGACTTCAGTATATTCTCTTTTTTAAAAAACTT
TACTTTTTTAATTAGGTATTTTCTTCATTTACATTTCAAATGCTATCCCA
AAAGTCCCCCAGAACCTCCCTCCCACTCCCCTACCCATCTACTCCCATTT
CTTGGCCCTGGTGTTCCCCCATACTGAGGCATATAAAGTTTGCAAGAACC
AGGGCCCTTCTTCCCATGATGGCCAACTAGCCATCTTCTGATAATTATGC
ACTAAAGAACCGAACTCTGGGGGGCACTGGATTAATCTATGTGTGGCCCT
CCTTAAGGTTTGAAAACCCTTTAAATCCTTGGGGACTAAATTTACTCCTT
TCTTGGGGCCCCGGTTCCCACTCAATAAGTCTTTGGAAACCACCTCTTGT
GTTTGTAATGCCCAAAATATCCCTCCAAAAAGAGTGTTGCGCCCCTCTCT
CACAATATCTGTCGTTTGTTAGAGCTCTACTTTCTACTAATA
NNNTTATTGACGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTTTTATGATATATAGGGTATTATTAGA
AAGGTAAATTATATGAGTCCCTAGGACCTGGAAATTTTAGATGTAGAAAC
ATGAGAACTAATAGTCTTTAAACTAATTGATCAGCCTAAAAATGATTTAT
TTTGTGCTAGACCAGAGCAGATAAGAAAAATATAGTTTAGGCTTAAAATG
GATTACAAAGATTATTCATGGATCAGTAATTTCTTACATGTGAGCATGTG
TAAATTCTTAGACATCTCTCAACTGAAAAATTAATAAGAGGAATGTGACA
TATTTGCACCATAGAGTATTATTCTCCTGTTAAAAACATGACATTATGAA
TTTTGAAGAATCATTTATCTCACATCCTTAGTAATGTAATCCATACTTAG
AATGTTTTTTTCCCCCCCCCCGCATTTAAAAGTGCCATACTAAAAAAAAG
GGAGGTGATAAACAAGCTACAATTCACAAAAACAAAGACATTAGGTACAA
AGAATGGCTATGGAGTGGTGGGAGTCACATGGATTCATTTGGGATGGAGA
AGTATAATAGATTTTTTGGGTGGACTGAAGGCAGGTGGGGGTGTTAGGTG
GTGGGAGAGATTGCTTGGAAACATGGCTGGAAATTGATGCATTTAGAGGG
AAGCGTGGAAACTTAGTGCACTGCAAATTTTGTGAAATCTATCAGGTGAC
TCTACTAACAGCTACTAGTAATTGAGGAAATATAATCTGAACCGGCTATA
TTTTGTAATCTGTTAAGACTTCCAGAAGGGGGATTGAATTCAGCTTTACT
TTTTGGGCCAGTGTTTTCTATGAATGCCCCCAAGCAATTGAGGCTGAAGC
TAGGAATGAAGATTGCCCTTTGAAATTTTCAGCTAGTTTCCCTGCTTTAG
GGAATCTTGCAAGCTAAGTGAGTGTAAAGAGTTTGATCTGGTGTCTGCGT
GGAACCCTGACACCCATTTCCATCCTTTTTTTTTCGGGGGGACCTGAATA
TTTAATATTTCCGAAAGAAATATTCTAAAACCTTTTGATCTTTCCTATAA
ATTAAACCGAATTGTGGATGCGTCTTATCCTTTCATAAACTCTTTTTGGC
CAAAAAGGTTTTATTTAATTTCCCTCTTAATCCGCAGACCACTCCTCGCG
TAATTTTTATTTTACCCATCGTGGTGACACAATTCATAATAAATCCGCAC
TACTATAGATCATCTTATTTCGCCCTGTTATCATAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_a12.g1 MSMg01no305_a12.g1 CHROMAT_FILE:
MSMg01no305_a12.g1 PHD_FILE: MSMg01no305_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:27 2005
         (384 letters)



>mm_chr16_68592395_68593178
          Length = 784

 Score =  650 bits (336), Expect = 0.0
 Identities = 369/380 (97%)
 Strand = Plus / Minus

                                                                       
Query: 2   tttttatgatatatagggtattattagaaaggtaaattatatgagtccctaggacctgga 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tttttatgatatatagggtattattagaaaggtaaattatatgagtccctaggacctgga 376

                                                                       
Query: 62  aattttagatgtagaaacatgagaactaatagtctttaaactaattgatcagcctaaaaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aattttagatgtagaaacatgagaactaatagtctttaaactaattgatcagcctaaaaa 316

                                                                       
Query: 122 tgatttattttgtgctagaccagagcagataagaaaaatatagtttaggcttaaaatgga 181
           |||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||
Sbjct: 315 tgatttattttgtgctagacaagagtagataagaaaaatatagtttaggcttaagatgga 256

                                                                       
Query: 182 ttacaaagattattcatggatcagtaatttcttacatgtgagcatgtgtaaattcttaga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttacaaagattattcatggatcagtaatttcttacatgtgagcatgtgtaaattcttaga 196

                                                                       
Query: 242 catctctcaactgaaaaattaataagaggaatgtgacatatttgcaccatagagtattat 301
           ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 195 catctctcaactgaagaattaataagaggaatgtgacatatttgtaccatagagtattat 136

                                                                       
Query: 302 tctcctgttaaaaacatgacattatgaattttgaagaatcatttatctcacatccttagt 361
           |||||||||||||||||||||| ||||| |||||||  |||||||||||||||||||| |
Sbjct: 135 tctcctgttaaaaacatgacatcatgaaatttgaaggctcatttatctcacatccttatt 76

                               
Query: 362 aatgtaatccatacttagaa 381
            |||||||||||||||||||
Sbjct: 75  gatgtaatccatacttagaa 56


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)