BAC Information

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BAC

Clone NameMSMg01-305M22
Chromosome16 (Build37)
Map Location 31,966,375 - 31,966,774
singlet/doubletsinglet
Overlap geneSenp5
Upstream geneAI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2
Downstream genePak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305M22.T7 (MSMg01no305_m22.b1)MSMg01-305M22.TJ (MSMg01no305_m22.g1)
ACCAG430657AG430658
length1,2101,288
length of high quality
(start - end)
421 (35 - 455)---
definitionCHROMAT_FILE: MSMg01no305_m22.b1 PHD_FILE: MSMg01no305_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:12 2005CHROMAT_FILE: MSMg01no305_m22.g1 PHD_FILE: MSMg01no305_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGCGGCACTGGGCGCTATAGACTCACTATGGGAGAGGATCCGCGGAAT
TCCCTCAGTGAGGACTACAAAGTGAGACCCTATCTCAAAAGAGAAAAGAA
AATTTTTTTAAAAAGCACAAAAAAACCATGAAATCCTGGTTAAGTTTTGG
TGTTTTGTTCATTCATAGAGTAAGGAAGGCTTTCTTACACTGAAAAAGAA
AAAAAGGAACAGCTTGATAAATTTAAATGTATTGCCGGGCAGTGGTGGCG
CACACCTTTAATCCCAGCACTTGGGAAGCAGAGGCAGGTGGATTTGAGGG
CAAATTGGTCTACAGAGTGAGTTTCAGGACAGCCAGGAATACACAGAGAA
ACCCTGTCTCAAAAAGAAAAAAATTTAAATGTATTACAAAATCTGTGTTA
TTGTTACATTTGGAGTTGTAGCCCAGTGGTATAGTCCAGGCTTGCCATAC
ATATTTTTTTTTTCCCCCCCCCATCAGCACCACTCCCCACACAAAAAAAG
AAGGAAATCTTACCTACATCATAAAGTTAGCAGAGAAGTGGTAGAGTTGG
AAAAATGTTTATGATATTAACTGAGAATCTATGGCTGAGTAAGGGCGGGA
AAGGGCCTGAGAAATGGACAGAGAGCTGAGACGTTCCTTACTTAACTTGA
GTTATTAATGATTTCTGCCATGCTCGCCTGTCTTTACACATCCCATCCCA
GGTTTCGGGTGTAGGCAGGTGACTGGTAAGGTGTCTAGCCTTGAGGGACA
CTGGACAGCTGTGAGGGGGAAGTAAAGTCCGGCTGGAAGCTCCCATAGGA
CGTCACCCGCTTGCACAGATCTCCTAACTGGTGGGGGGCAGGGTCCATAT
GTCACCAACGAATAAAGCCTGCACAGCATGTGTGTTGTGATTTCTTTTTA
ACAGAATATAAAAAAGTATTTGCTGACTGNACCCAGAGAAAAAATAGACC
TGAATTTCTTCGGGTTGGCAACTGCTGTTACAAGGTAAACTTTCGTACAA
AGAAATTTCGTGTGCGCCCGGAAACATGCCAATGTGCCGTCCTGCTGGAA
AATTTTAAAAAAGGAAAAGGGTCTCCCTGCCCCTTGGAACTTCCAAGAAA
CCTTTTAAACTCTCCCCCCCCTTGGGTGGAGAATTCTTTATCTCCTGTTA
ATATGTCCTTAACAATCTATCTAGCTATCCTAATATATGTCGGTGCCAAT
GAAAATAAAA
NNNCCCTTCTTTCTGNCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATGCCAGCCTGGTCTTCAGCCTCAGTTCC
AGGACAGCCAGGGCTAGAAGGAAAGGAGGGAGGGAGGGAGGGAGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNN
NNNCCNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTNNNNNNNNNNNNN
NNNNNNNNNTNNNNNNNNNNNNNNNNTTTTTTTTTTCCCCCCCCCCNNNN
NNNNNCCTCCCCCCCCCCAAAAAGGGGGGGNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTTTCNNTCNNTTNNTTTNTTTTCTTTTTTTTTTTCTTCCCCC
TCCTTTTCTTTTTTTCTCCTCTCCTTTCTTTTTTTTTCTCTTCTTCCTTC
TTTCCTTCTCTTCCCTTCCTTTCCTCTTCTTTTTCTTCCTTTTTTTCTTT
TTTTTTCTTCTTTTCTTTTTCCTTTTTCTCTCTTTTCCTTTCTTTCCCTC
TTTTCTCCTTCTTTCTTTCTTTTCTTCTTTTTTCTCTTTCCTTCTCCTTC
TCTTCTTCTTCTTCCTTTTTTTTTTTTTTTCCTCTTTCTCTCTCTTCTCT
CTCTTCTCCTTTCTTCTTTTTTTCTTTTTTCTCTTCCTCTCTCTCCTCCC
CCTCCCTTTTTTTTTTTTTCTCTTCCCNTCCTTTCTCTCCTCCCTTCCTT
TCTCTCTTTTTCCTTCTCCCTTTCTTTCCTTCTTTTCCTCTCTCTCTCTT
CTTTTTCTTTCCTTCCTCTTCTTTTTTTCTCTTTTCTCCTTCCCTCCCCT
TTTTCTTTCCTCTTTNTTCTTCCCTCTTTTCTTTTCTTTCTTTTTTCTTT
CTCTTCTCTTCTTCTCTTTTCTTTTCTTTCTTCTTTTCTTCNTTCCCTCT
CTTCTTCCTTTCCTCTCTCCCTCTCCCCTCCCTCTTTTCTCTCTCTCTTC
TTTTTCTCTCTTCNCTCTCTTTCTTTTCTTCCTTCNCTTTCTCTCTTCCT
CTTCTTTCCTTCTTTCTTTCTTTCCTTCTTCCTTTCCTCTCTTTCTCTTT
CTCTTCTCCTTTTTCTCTCCTTTTTTCTTTTCCTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_m22.b1 MSMg01no305_m22.b1 CHROMAT_FILE:
MSMg01no305_m22.b1 PHD_FILE: MSMg01no305_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:12 2005
         (421 letters)



>mm_chr16_31966375_31967196
          Length = 822

 Score =  758 bits (392), Expect = 0.0
 Identities = 398/400 (99%), Gaps = 1/400 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  gaattcc-ctcagtgaggactacaaagtgagaccctatctcaaaagagaaaagaaaattt 71
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gaattccactcagtgaggactacaaagtgagaccctatctcaaaagagaaaagaaaattt 341

                                                                       
Query: 72  ttttaaaaagcacaaaaaaaccatgaaatcctggttaagttttggtgttttgttcattca 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttttaaaaagcacaaaaaaaccatgaaatcctggttaagttttggtgttttgttcattca 281

                                                                       
Query: 132 tagagtaaggaaggctttcttacactgaaaaagaaaaaaaggaacagcttgataaattta 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tagagtaaggaaggctttcttacactgaaaaagaaaaaaaggaacagcttgataaattta 221

                                                                       
Query: 192 aatgtattgccgggcagtggtggcgcacacctttaatcccagcacttgggaagcagaggc 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 aatgtattgccgggcagtggtggcgcacacctttaatcccagcacttgggaagcagaggc 161

                                                                       
Query: 252 aggtggatttgagggcaaattggtctacagagtgagtttcaggacagccaggaatacaca 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 aggtggatttgagggcaaattggtctacagagtgagtttcaggacagccaggaatacaca 101

                                                                       
Query: 312 gagaaaccctgtctcaaaaagaaaaaaatttaaatgtattacaaaatctgtgttattgtt 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 100 gagaaaccctgtctcaaaaagaaaaaaatttaaatgtattacaaaatctgtgttattgtc 41

                                                   
Query: 372 acatttggagttgtagcccagtggtatagtccaggcttgc 411
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  acatttggagttgtagcccagtggtatagtccaggcttgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 822
Length adjustment: 9
Effective length of query: 412
Effective length of database: 813
Effective search space:   334956
Effective search space used:   334956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)