BAC Information

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BAC

Clone NameMSMg01-305P03
Chromosome16 (Build37)
Map Location 6,606,616 - 6,606,940
singlet/doubletsinglet
Overlap geneA2bp1
Upstream geneLOC100042436, LOC100042445
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305P03.T7 (MSMg01no305_p03.b1)MSMg01-305P03.TJ (MSMg01no305_p03.g1)
ACCAG430751AG430752
length1,2761,320
length of high quality
(start - end)
280 (117 - 396)344 (506 - 849)
definitionCHROMAT_FILE: MSMg01no305_p03.b1 PHD_FILE: MSMg01no305_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:30 2005CHROMAT_FILE: MSMg01no305_p03.g1 PHD_FILE: MSMg01no305_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCACTCTTTCGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAAT
TCAAGATCAGCCTCAGGTCTTATTCCTTAGGTTCCAAACCCCATGGCTTT
GGTGATGGCATTTAACACCAGCATCTGGAGCTCCCTAATTATGCAAGGCT
GGCTGGACTTGGCCAGTGATCACCAAGGATCCTGTCTCTATCCTCTCAAC
ACTGGAACTGCAGGCACGCACCACCATGCTCATCTTTGTACATGCGTTCT
GGGGGTTGAACTCATATCCTCACGTTTGTGAGGCAAGTCCTTCACCACCT
GCACTTGGCTTTTCCAGTCATGGATCCATCCTTTCTGGGGCTTCCTGTTG
CTTTTGTTGCATCTTAGAAAGAGGCAAGAGGAGCCCGCATTTCTCATTTT
TTTTTAAGACCACTTTCTGCACTCCTCGGATGGACAGGNAGNAACACACT
GTTTTTATTCCCCCCCCCCCNGNNNGGGACCCCCCCAAAAAAAAAAAAGA
GGGGNNNNCNNCNGNNGAGANNGCNNNNNGGANGAANAANGANNNCANNA
ANNNCNGCCAGNGAGCCCNCANCACGNCACANCANNNCCGGCANCCNNGA
AGCCAAGNNACANAAGGGAAACAGNANAGAGCNGCANGNAGGGGAACCAC
CANCACCACAGAGAANNGNCACCANGGCGAACCNAAACCANGGCAAACCG
GNNGAANCANNCNNNCCCGGNNCNNGCAAGGGGNGAAAACAGGGGNNCCG
GACNGGAANNNCANNAAGGACAGGAGGCNCAAAACNNGGACCCAGAGNCN
CAGAAGCAAGAACCCGGNGNAANAGAAAGGCNNAAAGGGGAAGGGAAGCC
CCCGGAAAAGAAACACAGGNGGCAAGAACNNCAACGGNNGCCCCACCCCG
CCCCAAANAAAACCNAAGNGAAAGCCCGGNNNNAAAAGGGGAAAAAAGCC
CGGNGAAAAGCCGGGCGGCCAGGCCGGCAAAGAAAAAAACCGAGCCGCAN
CCGGGGGAGCCGGGAAACCCGGGACCAAAAAACCAAACCGCCAAGGCCAA
ACCCCCCAAAAAACCAAAAAACCCAAAGGCAAGGCGGGCCCAAAACCAAC
GGGAAAAACCCCGGGAAAGGGCCCAAGCCCGGGGNCNGGCCCAAAAACCA
ACCCAAAAAGAACCCCAAAACCGGGGCCCGCCCCCCCCAAAAAAAAGACC
ACCGCCACGGGAGGGCGCGCAAAAACAACAAAAGAGCCNGGGGAAAAACA
AACAACAAACACAAGGGGCGGAGGGG
NNGGTTCGATGAGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATATGCATACCGAAGTGGCTTTACATTC
ACAGAGACTGCCCTCTCACTGCTATGATTAAGTCTTGTCTGTGCCCTGGA
CTACTCACTGTCCGTACCTGCCCTTGGCGAGTCGAAGGTGAAGTGGCACA
GAGTCAACAACAGAGACTCTGGGAGCAGATGAGAATCACCACAGCAAGCT
CTCTGAACATTGCTGCAAGCTTTTTAAATATACTCCACCAGCATCCCACT
GGTCCCAAGAAAGCATGTCTTCTAAACAAAAAAAGTTTCTGATTGGCTGG
CATTGTCTGTACCAGCAATCCTTGGTCTCCAAGGCAGTCCCCAACTAGGT
CTTATTGCAGGAGATCCTTTTGCAGCTGCAAGGCCCCAGGTGTTTACATA
GATTTTTTTTTCCCCCCCCCGCTACAATTAAGGGTGGATAAAAAAAAGGG
GACTCCAAGGAGATTGTCCATGTTTTCCTTTTCCTTTTAAAATGGGGTCT
CATGTAGCCCAGCTGGTCTCAAACTTTCTGTTTGTCAAAATATGGCCCTG
AACTTATTATCCTCTTGCCTCTACCTCATGAGACCTGCAATTACAAGCAT
CTGTGAGGACACCAGGTTCAAGCGATGCTTGTAGAACCTAGAGCTTTGTA
CACTACAGGCAAGTACTCAACCAAGTACTGGACCTTGAGGTGTATCTCAG
TGAAACACATTAATTCTTAGTACAACAAAGTGACCACGTCCCTTTCCCTA
ACAAGCAGTGTACCTTAGATTAGAAAGGGAGAAATTTAAACCCTTGATTG
AAAAGACACCTCTTTCCCTTATGTCTTAGTCAGGGTTTCTATTCCTGCAC
AAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTT
ACACTTCCATACTGCTGTTCATCACCAAGGAGTCAGGACTGGAACTCAAG
CAGGTCAGAAAATAGGAGCTGATGCAAAACCCATGAAGGGATGTTCTTTA
CTGGTTTGGCTCCCCTGGCTTGCTCCACCTGGTTCCTTATAAACCCAAAA
TATCCACCCCAAAAGGTTCCACACCCAAAGGGGCCTTTCCCCCTGGTCCC
AAATTGGAAAATGCCCTAAGTTGGTTTTCGGGAGGATTTCTCTCCCGGAA
CTCCTTTTTTTGAGAAACCCGCGTTGGAGGTGTACAAACTATTCGCACAC
TTTATAATGGCCAGGGGCCCTAAATTTTTTTCTTCCTTTGAAAGAAATAT
ATTGTTTTATATAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_p03.g1 MSMg01no305_p03.g1 CHROMAT_FILE:
MSMg01no305_p03.g1 PHD_FILE: MSMg01no305_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:30 2005
         (344 letters)



>mm_chr16_6606197_6606940
          Length = 744

 Score =  629 bits (325), Expect = 0.0
 Identities = 325/325 (100%)
 Strand = Plus / Minus

                                                                       
Query: 20  ttccttttccttttaaaatggggtctcatgtagcccagctggtctcaaactttctgtttg 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttccttttccttttaaaatggggtctcatgtagcccagctggtctcaaactttctgtttg 685

                                                                       
Query: 80  tcaaaatatggccctgaacttattatcctcttgcctctacctcatgagacctgcaattac 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcaaaatatggccctgaacttattatcctcttgcctctacctcatgagacctgcaattac 625

                                                                       
Query: 140 aagcatctgtgaggacaccaggttcaagcgatgcttgtagaacctagagctttgtacact 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagcatctgtgaggacaccaggttcaagcgatgcttgtagaacctagagctttgtacact 565

                                                                       
Query: 200 acaggcaagtactcaaccaagtactggaccttgaggtgtatctcagtgaaacacattaat 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acaggcaagtactcaaccaagtactggaccttgaggtgtatctcagtgaaacacattaat 505

                                                                       
Query: 260 tcttagtacaacaaagtgaccacgtccctttccctaacaagcagtgtaccttagattaga 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcttagtacaacaaagtgaccacgtccctttccctaacaagcagtgtaccttagattaga 445

                                    
Query: 320 aagggagaaatttaaacccttgatt 344
           |||||||||||||||||||||||||
Sbjct: 444 aagggagaaatttaaacccttgatt 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)