BAC Information

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BAC

Clone NameMSMg01-306I02
Chromosome16 (Build37)
Map Location 88,648,346 - 88,648,591
singlet/doubletsinglet
Overlap genenone
Upstream geneBach1, LOC100039901, Grik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik
Downstream geneEG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306I02.T7 (MSMg01no306_i02.b1)MSMg01-306I02.TJ (MSMg01no306_i02.g1)
ACCAG431148AG431149
length743762
length of high quality
(start - end)
657 (51 - 707)296 (77 - 372)
definitionCHROMAT_FILE: MSMg01no306_i02.b1 PHD_FILE: MSMg01no306_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:18 2005CHROMAT_FILE: MSMg01no306_i02.g1 PHD_FILE: MSMg01no306_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGTGCTATATCATCTGGCCTTTTTTGTTTGTTTGTTTTTG
TTTTTTTGCTGGGGAAACTTTTATATACTGTTTCTTTTCACCAGGGGTTA
TAGATATATTTAAATTGCTTATCTTTATCATCTTCATCTTAAGTTTAATA
AGCAGTATGTATGCAGAAAATTATCTTTTTTTTTAGATTTTCTAATTTTC
TGGAATACAGGTTTTCAAAGTATATTTCTATGATTCTCTGGATTTCCTCA
GGTATATTGTTATACTCCCTTCCCCCTTTCTCTCTCTCCCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCTCCCCTCCCCTCCCCTCTCTTTCTCTCTTTGGTTTTTCGAGA
CAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAACTCACTCTGTAGACC
AGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTG
GGACTAAAGGCATGTGCCACCACACCCAGCTCTTTCTCTAATTTTGTTAA
TTTGTATATTCTCTTTGTCTTCTAGCTAATTTGGATAAGGACTGGTCAAA
CATATTGATTTTCTCGAAGAACCAACTATTCATTTTATTGATTCTTTGCT
GCTGCGGGTGTTTGTTTTCGTTTGAGCCCTGAGTTTGATTATT
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTTGGAATTGTCTTTGAAATT
TGAAGCAAACTACTTTGAATAGTGGCCAGCTACACATAACTAGCTGAGAA
GTAATTCTATTCTCTTCGTAAAATGGGTATATATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATATAAAGAGGC
TTGCAGGAGAAGATAAAAAATCTTACAACTTTTATGATCAAAAGAATTTT
AAAGGCCATCCTGGGAAAGACTCCTGCATGTTTTCCTTTATTTCACCATC
TGAATAGAAAATGGTTTCTTTTGTTTATACGCCCACCCACAAAATGAGTG
CTTGCTTCATTAAATTCTATAGATGAATAAACAGACAAATGAGATTGTGC
TTTGTCCGTGATGGTTTAAAATGTAGGTAATGAGATGTTCAGTTAAAACG
ATCGACTCCAGGTTGAACAAGAGCAAATTCATAAAGAGGGTTGGACAAAA
TGGCACTTATCATGAATCCAACAAACATATCTTTCAATGTCGTTCATATT
ACCACTGAAAGGCGTCATTCTGAGTAAAAAGAACAAATCCTTTTATGATG
AACATGGCAGCGTTTATTTCCTACATCTGATCTCAATTTCCAAAAGGGAT
TCCATGCCTTGGTTGGTATAAATTCGTACATTAAAGTGTATGCAAACTTT
CGCTAGGGTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_i02.g1 MSMg01no306_i02.g1 CHROMAT_FILE:
MSMg01no306_i02.g1 PHD_FILE: MSMg01no306_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:19 2005
         (296 letters)



>mm_chr16_88648146_88648841
          Length = 696

 Score =  335 bits (173), Expect = 2e-96
 Identities = 240/293 (81%), Gaps = 48/293 (16%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccttggaattgtctttgaaatttgaagcaaactactttgaatagtggccagctacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct: 201 ttccttggaattgtctttgaaatttgaagcaaactactttgaatagtagcaaactacaca 260

                                                                       
Query: 61  taactagctgagaagtaattctattctcttcgtaaaatgggtatatatatatatatatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   
Sbjct: 261 taactagctgagaagtaattctattctcttcgtaaaatgggtatatatatatataaa--- 317

                                                                       
Query: 121 atatatatatatatatatatatatatatatatatatatatatatataaagaggcttgcag 180
                                                       || |||||||||||||
Sbjct: 318 --------------------------------------------atcaagaggcttgcag 333

                                                                       
Query: 181 gagaagataaaaaa-tcttacaacttttatgatcaaaagaattttaaaggccatcctggg 239
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gagaagataaaaaaatcttacaacttttatgatcaaaagaattttaaaggccatcctggg 393

                                                                
Query: 240 aaagactcctgcatgttttcctttatttcaccatctgaatagaaaatggtttc 292
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aaagactcctgcatgttttcctttatttcaccatctgaatagaaaatggtttc 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)