Query= MSMg01no306_l14.b1 MSMg01no306_l14.b1 CHROMAT_FILE:
MSMg01no306_l14.b1 PHD_FILE: MSMg01no306_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:36 2005
(696 letters)
>mm_chr16_34244954_34246049
Length = 1096
Score = 739 bits (382), Expect = 0.0
Identities = 434/462 (93%), Gaps = 22/462 (4%)
Strand = Plus / Minus
Query: 4 ggaattcactgctttggagctccttctctgtggttcattgtagagatgtaaagagggcag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaattcactgctttggagctccttctctgtggttcattgtagagatgtaaagagggcag 382
Query: 64 agggctgggccttagttagcagaggcaggaggcagagtacgtgaagttgcttgagccgag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggctgggccttagttagcagaggcaggaggcagagtacgtgaagttgcttgagccgag 322
Query: 124 gtgtagagaatgaactagctaatccccaccagcccagtgcttttatttattacatgctcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtagagaatgaactagctaatccccaccagcccagtgcttttatttattacatgctcc 262
Query: 184 atgcttcactatatcattactgctttctgtagattagaatctgcttgattttcaagatcg 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcttcactatatcattactgctttctgtagattagaatctgcttgattttcaagatca 202
Query: 244 gtggttttcaacctccctaatgctttgactctttaatacagtatctatcatgttgtggtg 303
||||||||||||||||||||| ||||||||||||||||||||||| || || |||||||
Sbjct: 201 gtggttttcaacctccctaatactttgactctttaatacagtatc-at-at--tgtggtg 146
Query: 304 acaccccacac-acaaccataaaatattccccaaatgggggctggatatatggctcagag 362
|||| | |||| ||||||||||||||| ||| |||||||||||||
Sbjct: 145 acacac-acaccacaaccataaaatat----------------ggagatatggctcagag 103
Query: 363 gttgagagcactggactgatctttcagaggttctgagttcaattcccagcaattgaacac 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgagagcactggactgatctttcagaggttctgagttcaattcccagcaattgaacac 43
Query: 423 atggtggctcacaaccatctaaaatgaggtctagcaccttct 464
|||||||||||||||||||||||||||| |||||||||||||
Sbjct: 42 atggtggctcacaaccatctaaaatgagttctagcaccttct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space: 744996
Effective search space used: 744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no306_l14.g1 MSMg01no306_l14.g1 CHROMAT_FILE:
MSMg01no306_l14.g1 PHD_FILE: MSMg01no306_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:36 2005
(671 letters)
>mm_chr16_34083726_34084801
Length = 1076
Score = 1195 bits (618), Expect = 0.0
Identities = 660/680 (97%), Gaps = 13/680 (1%)
Strand = Plus / Plus
Query: 1 atagctctcagtttgactggaccacactaggtgtctacacctggcttcagatttgaactg 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagttctcagtttgactggaccacactaggtgtctacacctggcttcagatttgaactg 260
Query: 61 aactgaacttccatctggcctggaggggtcataggaaaccccttggatgtcttacaaagt 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 aactgaacttccatctggcctggaggggtcataggaaaccccttggacgtcttacaaagt 320
Query: 121 cttctggatttgcttggatactcagacagactctgatagaataagaccagctggacctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctggatttgcttggatactcagacagactctgatagaataagaccagctggacctag 380
Query: 181 ctcttggctcttggttgttgattactaagttgtggtttgagatggacttgggtcccctga 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcttggctcttggttgttgattaccaagttgtggtttgagatggacttgggtcccctga 440
Query: 241 gtggtagagggtccccagaatcccagtagacatctgtgagcaccagatgtaagt----gg 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 gtggtagagggtccccagaatcccagtagacatctgtgagcaccagatgtaagtaagtgg 500
Query: 297 ctaccatgggaaaggatttttggtcaaaatatagtttcaggaatctaggaggaaattcca 356
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 ctaccacgggaaaggatttttggtcaaaatttagtttcaggaatctaggaggaaattcca 560
Query: 357 gtttgccgggtccccccccc----tcctagatttttttt-ccaaagagctgtgctccccg 411
|||||||||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct: 561 gtttgccgggtccccc----gttgtcctagatttttttttccaaagagctgtgctctccg 616
Query: 412 ctggccggatccagtccaactcgctctaacttttccaaacaaagaggcaggtgcattctg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctggccggatccagtccaactcgctctaacttttccaaacaaagaggcaggtgcattctg 676
Query: 472 ctttcactaccctccctctttcaaaggccaagtcatctgctatagatagtatgatgtcat 531
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctttcactaccctccccctttcaaaggccaagtcatctgctatagatagtatgatgtcat 736
Query: 532 ctccctaatttccactaaaaaaataaaaagaggccaaagtacaatgtatagtactcagca 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ctccctaatttccactaaaaaaataaaaagaggccaaagtacaatgtatagtactcagca 796
Query: 592 caacaaggacttgcagaatatcatctccactctaacacggaacccaattcaaacaattgt 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 caacaaggacttgcagaatatcatctccactctaacacggaacccaattcaaacaattgt 856
Query: 652 ggcactctactttttttttt 671
||||||||||||||||||||
Sbjct: 857 ggcactctactttttttttt 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1076
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1066
Effective search space: 704626
Effective search space used: 704626
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
