BAC Information

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BAC

Clone NameMSMg01-307P14
Chromosome16 (Build37)
Map Location 4,502,902 - 4,503,474
singlet/doubletsinglet
Overlap geneSrl
Upstream geneLOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332, Adcy9, EG620313
Downstream geneTcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307P14.T7 (MSMg01no307_p14.b1)MSMg01-307P14.TJ (MSMg01no307_p14.g1)
ACCAG432176AG432177
length740855
length of high quality
(start - end)
593 (66 - 658)191 (60 - 250)
definitionCHROMAT_FILE: MSMg01no307_p14.b1 PHD_FILE: MSMg01no307_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:10 2005CHROMAT_FILE: MSMg01no307_p14.g1 PHD_FILE: MSMg01no307_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATGCGCGGAAT
TCTTAGCCCTTTCACATCTTCTCCCTTTGAAAAAAATCAAAGACTTCAAC
ACACTTGCTTTTTACCTATAAAGTACACAGAACTGACATAATAATTTTGT
TTTCCACCTCATACCTAGTTCCTATGAATATCTGGTTTGAGAGATATACA
GAGAAATTGCTATAAATCCTCTAACCATTGGCAGATATGTAGGGCTTGTG
GTAGATGCCAGGGGGATTCATAATGTAAATGATGTTTGTTTATTTTTCGT
TTGTGGGTGATTAGTTGGCTAGTTGGGTTTCTTATTTTTGTTTATTTGTC
TTTGAAATAAGCTCTCAGATAGTGTGGTGTGGCCTTCAAACTCATTATGT
GGCCAGGGCTGGCCCCAACCTCCGAATCCTAAGCCTCTATCTCCCAAGTG
CTAAGATCACAGGCATACATCACCAGGCCCAGACAATTGGTTTTGGAGTT
TTTGTGAGGTTTTTTGTTTATTTGTTTGCTTTTTTGTTTGGGGTCTTTTG
TAACAGGGTTTCTTTATCTATATCACCCTGGATGTCCTGGAACTCACAGA
GATCTTCCTGTACCTCCCAGGTACTGGGATCAAAGGCATTGTCAGCACTG
CCCAGCTAATTGATTTTTTAAGCCAAGGTTGTGCTATATAGTTCTGGGTG
GCTTGGTACTATATAACTCAGCCTGGCCTCATATCATAGC
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCCAGAAATTCTAGGACAGCCAGGACTACACAGAGAAACCC
TGTCTCAAAAAATAAATAAATAAATAAATAAACAAAAATAAAATAAAAAT
AAAACTCAAAACAAAGGGGTAGAAAGGGAGGGAAGGGGAGACAAGAGGTG
GGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
ATATATTTGTTCTCCCCGGTCCTTTTCTTTTATCTCCCCGTCCCCCATTC
TCACGACAAACCCATTTTTTTTTTTTTTTGCCACTCCCTTTTTTTTTTTC
TCCATACTTATTTTTTTTTTTTCCCCCCCCCCCCCCCCCCTGTGTTTTTA
TAATTATGTATTTTTTTTTCCCCCCCCCCCCCCCCCCAAAAACAAAAATT
ATTTTGCCTTTGCCGTTCGCTGCTCCTTTCCACCAACCTGTGGTCTTTAT
CTTTCTCTTCCCCCTCTCTTCATGTATCTTGCTCCCTCCTGGTGTTCTCT
ACATTCCCCCCCCCCCTTTTTTCCCCCCCTTCTTTATCATTTTTTCTCTT
TTTCTTCTCTTCCCTCCTCTTTTTCTTCATTCCGACCTCTTTACCTACGT
CTCCCCTACTCACATAATATTTTCTATTCGTCTCTTTTACCCTCATTTTC
ACGCTCCCCCCCTTTTTCACCACCTATTTTTTTATCTCACACATTTTCTT
TTTCACCTCTCTTCGCCTTTATGTTTTTCTTCATACCTTACCCATAATGT
TAGCTTTCTCTTATCATCTTCTCATGCACTGGTACATTCTCTCTTATCTC
TTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_p14.b1 MSMg01no307_p14.b1 CHROMAT_FILE:
MSMg01no307_p14.b1 PHD_FILE: MSMg01no307_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:10 2005
         (593 letters)



>mm_chr16_4502702_4503694
          Length = 993

 Score = 1015 bits (525), Expect = 0.0
 Identities = 567/593 (95%), Gaps = 20/593 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttctccctttgaaaaaaatcaaagacttcaacacacttgctttttacctataaagta 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttctccctttgaaaaagatcaaagacttcaacacacttgctttttacctataaagta 260

                                                                       
Query: 61  cacagaactgacataataattttgttttccacctcatacctagttcctatgaatatctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacagaactgacataataattttgttttccacctcatacctagttcctatgaatatctgg 320

                                                                       
Query: 121 tttgagagatatacagagaaattgctataaatcctctaaccattggcagatatgtagggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgagagatatacagagaaattgctataaatcctctaaccattggcagatatgtagggc 380

                                                                       
Query: 181 ttgtggtagatgccagggggattcataatgtaaatgatgtttgtttatttttcgtttgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtggtagatgccagggggattcataatgtaaatgatgtttgtttatttttcgtttgtg 440

                                                                       
Query: 241 ggtgattagttggctagttgggtttcttatttttgtttatttgtctttgaaataagctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgattagttggctagttgggtttcttatttttgtttatttgtctttgaaataagctct 500

                                                                       
Query: 301 cagatagtgtggtgtggccttcaaactcattatgtggccagggctggccccaacctccga 360
           ||||||||||||||||||||||||||||||||||||||||||||||| |  || ||||||
Sbjct: 501 cagatagtgtggtgtggccttcaaactcattatgtggccagggctggtcttaagctccga 560

                                                                       
Query: 361 atcctaagcctctatctcccaagtgctaagatcacaggcatacatcaccaggcccagaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcctaagcctctatctcccaagtgctaagatcacaggcatacatcaccaggcccagaca 620

                                                                       
Query: 421 attggttttggagtttttgtgaggttttttgtttatttgtttgcttttttgtttggggtc 480
           ||||||||| ||||||||||||||||||||||||    |||                |||
Sbjct: 621 attggtttttgagtttttgtgaggttttttgttt----gtt----------------gtc 660

                                                                       
Query: 481 ttttgtaacagggtttctttatctatatcaccctggatgtcctggaactcacagagatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttttgtaacagggtttctttatctatatcaccctggatgtcctggaactcacagagatct 720

                                                                
Query: 541 tcctgtacctcccaggtactgggatcaaaggcattgtcagcactgcccagcta 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tcctgtacctcccaggtactgggatcaaaggcattgtcagcactgcccagcta 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)