BAC Information

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BAC

Clone NameMSMg01-308D14
Chromosome16 (Build37)
Map Location 26,537,342 - 26,537,580
singlet/doubletsinglet
Overlap genenone
Upstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057
Downstream geneIl1rap, Gm606, Ostn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308D14.T7 (MSMg01no308_d14.b1)MSMg01-308D14.TJ (MSMg01no308_d14.g1)
ACCAG432363AG432364
length737744
length of high quality
(start - end)
609 (45 - 653)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no308_d14.b1 PHD_FILE: MSMg01no308_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:29 2005CHROMAT_FILE: MSMg01no308_d14.g1 PHD_FILE: MSMg01no308_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGCTATATCCAAGAATTCTATCCTGAATACAATTTACAAAACACA
AGAGAATCAAGAAGAAGGAAGACCCACACGTGGATAATTCATTCCTCCCT
AGAATAGGGAACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTTGG
AACTAAGATAAAGGATGGACCATCCAGAGACTGCCCCTGAGGATCCATCC
CATAATCAGCTACGAAACGCAGACACTATTGCATGTGCCAGCAAGATTTT
GTTGAAAGGACCCTGATATAGCTGTCTCCTGTGAGGCTATGCCAGTGCCT
GGCAAATACAGAATTGTATGCTCACAGTCATCTATAGGATGGAACACAGG
GCCCCCAATGGAGGAGCTACACAAAGTACCCAAGGAGTTGAAGGGGTCTA
CAACCCTATAGGTGGACCAACAATATGAACTAACCAGTACCCACAGAGCT
CATGTCTCTAGCTGCATATGTAGGAGAAGATGGCCTAGTTGGCCATCATT
GGGAAGAGAAGCCCCTTGGACTTGCAAACTTTATATGTCCCAGTTCAGGG
GAACACCATGGGCAAGAAGTGGGAGTGGGTGAGTAGGGAAGCAGGGCAGG
GGGAGGGTATAGGGGGAGCTTTTGTCTTTTCCCCCCCGCCTCTCTTTTTG
TGGGCGTGGCGGGCCGCATTCTCCTCTTTTCCCCCCG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAACAGACCCCCCCCAACCCCCAC
ATCCTATAGACTCAAACAGCAGAGACAGGACAATTTGCCTGCTGCTCCTC
TGACAATGGGATATTCTTGTGCTAACTTAGGGCCTTGCAGCTCCACACCT
TGCAAGCATATGACCTCACACTGAGGCTTAGCTTGCCATCAGCAGGTGGA
TGTAGGCTGAATTCCATCAGTGACCTTACTGAATTTATAGGTTGGAAATG
GTTTATAGTAGATCTTCCGACCTTTGTAATGTCATGAGCTGATTTGCATA
AGAAATCCCCTCTTCTATTCTTTTATCACGCTCTCCTCATTCTGCTTCTT
TGGAGAACACAAGTACAAAGCACAGATAGTCACCGAAGTGTTCTCCAAAC
ATGACTATATTAGAAACATAAATAATTCAGCCCTTGGGGCAGAGAAATGA
AGTTTGGCGGGAATGACGTAGACCTAGGAAGGATCAGGGTTGATGAACAT
GATCAAAATGCATTGGATGAGATTCTCAGGGGCTAATATAAGCATTATTT
AAATATTTGCGCGGATGAGTTTTTTTTTTCTCCACCCCTATCATTCCTCC
CCTCTCCATACTCATTTCAATATCCATTATTCCCCCTCCCCTTCCCCCCC
ACATCCTTTTTTTTCTCTTATCCCCCCCCCCTTTTTTCCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_d14.g1 MSMg01no308_d14.g1 CHROMAT_FILE:
MSMg01no308_d14.g1 PHD_FILE: MSMg01no308_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:29 2005
         (290 letters)



>mm_chr16_26537211_26537899
          Length = 689

 Score =  410 bits (212), Expect = e-119
 Identities = 233/240 (97%), Gaps = 1/240 (0%)
 Strand = Plus / Minus

                                                                       
Query: 51  aggacaatttgcctgctgctcctctgacaatgggatattcttgtgctaacttagggcctt 110
           ||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||
Sbjct: 370 aggacaatttgcctgctgcttgtctgacaat-ggatattcttgtgctaacttagggcctt 312

                                                                       
Query: 111 gcagctccacaccttgcaagcatatgacctcacactgaggcttagcttgccatcagcagg 170
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 311 gcagctccacaccttgcaagcacatgacctcacactgaggcttagcttgccatcagcagg 252

                                                                       
Query: 171 tggatgtaggctgaattccatcagtgaccttactgaatttataggttggaaatggtttat 230
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 251 tggatgtaggctgaattccatcagtgaccttactgaatttatagattggaaatggtttat 192

                                                                       
Query: 231 agtagatcttccgacctttgtaatgtcatgagctgatttgcataagaaatcccctcttct 290
           |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 191 agtagatcttccaacctttgtaatgtcacgagctgatttgcataagaaatcccctcttct 132


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space:   191080
Effective search space used:   191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)